AT4G00120 (GT140, IND1, IND, EDA33)


Aliases : GT140, IND1, IND, EDA33

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein


Gene families : OG_01_0000092 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000092_tree ,
OG_02_0000040 (LandPlants) Phylogenetic Tree(s): OG_02_0000040_tree ,
OG_03_0000031 (SeedPlants) Phylogenetic Tree(s): OG_03_0000031_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G00120
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00265010 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
AT1G09530 PIF3, POC1, PAP3 phytochrome interacting factor 3 0.05 Archaeplastida
AT1G27740 RSL4 root hair defective 6-like 4 0.03 Archaeplastida
AT1G66470 RHD6 ROOT HAIR DEFECTIVE6 0.05 Archaeplastida
AT2G43010 SRL2, PIF4, AtPIF4 phytochrome interacting factor 4 0.05 Archaeplastida
AT2G46970 PIL1 phytochrome interacting factor 3-like 1 0.05 Archaeplastida
AT3G21330 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida
AT3G50330 HEC2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.08 Archaeplastida
AT5G01305 No alias No description available 0.04 Archaeplastida
AT5G37800 ATRSL1, RSL1 RHD SIX-LIKE 1 0.05 Archaeplastida
AT5G67060 HEC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.08 Archaeplastida
GSVIVT01018165001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 Archaeplastida
GSVIVT01022120001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.06 Archaeplastida
GSVIVT01028516001 No alias External stimuli response.light.red/far red light.PIF... 0.04 Archaeplastida
GSVIVT01030333001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
Gb_06182 No alias transcription factor (bHLH) 0.03 Archaeplastida
Gb_12264 No alias transcription factor (bHLH) 0.03 Archaeplastida
Gb_27869 No alias transcription factor (bHLH) 0.05 Archaeplastida
LOC_Os01g02110.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
LOC_Os01g61480.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
LOC_Os06g10820.1 No alias transcription factor (bHLH) 0.05 Archaeplastida
LOC_Os06g47980.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os08g01700.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os09g28210.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
MA_10156436g0010 No alias transcription factor (bHLH) 0.04 Archaeplastida
MA_29186g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_83500g0010 No alias transcription factor (bHLH) 0.06 Archaeplastida
Pp3c10_19020V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida
Pp3c1_40040V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
Pp3c3_8460V3.1 No alias ROOT HAIR DEFECTIVE 6-LIKE 2 0.02 Archaeplastida
Smo405220 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
Solyc01g107140.3.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
Solyc02g090950.1.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Solyc02g091440.2.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Solyc02g093280.2.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Solyc04g077960.1.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Solyc09g005070.1.1 No alias transcription factor (bHLH) 0.09 Archaeplastida
Solyc12g088380.1.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
Solyc12g088790.3.1 No alias transcription factor (bHLH) 0.06 Archaeplastida
Zm00001e005046_P003 No alias transcription factor (bHLH). PIF red/far-red light... 0.03 Archaeplastida
Zm00001e006917_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e015610_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e019392_P001 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e020012_P001 No alias transcription factor (bHLH) 0.08 Archaeplastida
Zm00001e021883_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e025454_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e025656_P001 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e027758_P002 No alias transcription factor (bHLH) 0.06 Archaeplastida
Zm00001e029147_P001 No alias transcription factor (bHLH) 0.07 Archaeplastida
Zm00001e032280_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e034339_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e041668_P001 No alias transcription factor (bHLH) 0.05 Archaeplastida
AMTR_s00008p00265010 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 LandPlants
AMTR_s00024p00250370 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.02 LandPlants
AT1G09530 PIF3, POC1, PAP3 phytochrome interacting factor 3 0.05 LandPlants
AT1G66470 RHD6 ROOT HAIR DEFECTIVE6 0.04 LandPlants
AT3G21330 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 LandPlants
AT3G50330 HEC2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.06 LandPlants
AT5G37800 ATRSL1, RSL1 RHD SIX-LIKE 1 0.05 LandPlants
AT5G67060 HEC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.05 LandPlants
GSVIVT01022120001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 LandPlants
GSVIVT01030333001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 LandPlants
Gb_06182 No alias transcription factor (bHLH) 0.03 LandPlants
Gb_12264 No alias transcription factor (bHLH) 0.03 LandPlants
Gb_27302 No alias transcription factor (bHLH) 0.02 LandPlants
Gb_27869 No alias transcription factor (bHLH) 0.03 LandPlants
LOC_Os01g61480.1 No alias transcription factor (bHLH) 0.03 LandPlants
LOC_Os06g10820.1 No alias transcription factor (bHLH) 0.05 LandPlants
LOC_Os08g01700.1 No alias transcription factor (bHLH) 0.03 LandPlants
LOC_Os08g36740.1 No alias transcription factor (bHLH) 0.02 LandPlants
LOC_Os09g28210.1 No alias transcription factor (bHLH) 0.02 LandPlants
MA_29186g0010 No alias no hits & (original description: none) 0.04 LandPlants
MA_306658g0010 No alias transcription factor (bHLH) 0.02 LandPlants
MA_83500g0010 No alias transcription factor (bHLH) 0.06 LandPlants
Mp3g23300.1 No alias transcription factor (bHLH) 0.02 LandPlants
Pp3c10_19020V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 LandPlants
Pp3c17_15380V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 LandPlants
Pp3c1_40040V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 LandPlants
Solyc01g107140.3.1 No alias transcription factor (bHLH) 0.03 LandPlants
Solyc02g090950.1.1 No alias transcription factor (bHLH) 0.03 LandPlants
Solyc02g091440.2.1 No alias transcription factor (bHLH) 0.03 LandPlants
Solyc02g093280.2.1 No alias transcription factor (bHLH) 0.03 LandPlants
Solyc04g077960.1.1 No alias transcription factor (bHLH) 0.02 LandPlants
Solyc09g005070.1.1 No alias transcription factor (bHLH) 0.09 LandPlants
Solyc10g018510.2.1 No alias transcription factor (bHLH) 0.02 LandPlants
Solyc11g005780.3.1 No alias transcription factor (bHLH) 0.02 LandPlants
Solyc12g088380.1.1 No alias transcription factor (bHLH) 0.03 LandPlants
Solyc12g088790.3.1 No alias transcription factor (bHLH) 0.06 LandPlants
Zm00001e006917_P001 No alias transcription factor (bHLH) 0.04 LandPlants
Zm00001e015610_P001 No alias transcription factor (bHLH) 0.02 LandPlants
Zm00001e019392_P001 No alias transcription factor (bHLH) 0.02 LandPlants
Zm00001e020012_P001 No alias transcription factor (bHLH) 0.04 LandPlants
Zm00001e020477_P001 No alias transcription factor (bHLH) 0.02 LandPlants
Zm00001e021883_P001 No alias transcription factor (bHLH) 0.04 LandPlants
Zm00001e025454_P001 No alias no hits & (original description: none) 0.03 LandPlants
Zm00001e027758_P002 No alias transcription factor (bHLH) 0.06 LandPlants
Zm00001e029147_P001 No alias transcription factor (bHLH) 0.07 LandPlants
Zm00001e032280_P001 No alias transcription factor (bHLH) 0.04 LandPlants
Zm00001e034339_P001 No alias transcription factor (bHLH) 0.04 LandPlants
Zm00001e041668_P001 No alias transcription factor (bHLH) 0.05 LandPlants
AT1G66470 RHD6 ROOT HAIR DEFECTIVE6 0.03 SeedPlants
AT3G50330 HEC2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 SeedPlants
AT5G37800 ATRSL1, RSL1 RHD SIX-LIKE 1 0.04 SeedPlants
GSVIVT01030333001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 SeedPlants
Gb_27302 No alias transcription factor (bHLH) 0.02 SeedPlants
LOC_Os06g10820.1 No alias transcription factor (bHLH) 0.05 SeedPlants
LOC_Os12g32400.1 No alias transcription factor (bHLH) 0.02 SeedPlants
MA_10156436g0010 No alias transcription factor (bHLH) 0.02 SeedPlants
MA_29186g0010 No alias no hits & (original description: none) 0.02 SeedPlants
MA_306658g0010 No alias transcription factor (bHLH) 0.02 SeedPlants
Solyc09g005070.1.1 No alias transcription factor (bHLH) 0.03 SeedPlants
Solyc12g088790.3.1 No alias transcription factor (bHLH) 0.05 SeedPlants
Zm00001e006917_P001 No alias transcription factor (bHLH) 0.02 SeedPlants
Zm00001e027758_P002 No alias transcription factor (bHLH) 0.04 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006355 regulation of transcription, DNA-templated TAS Interproscan
BP GO:0010197 polar nucleus fusion IMP Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011598 bHLH_dom 127 167
No external refs found!