AT3G63130 (RANGAP1, ATRANGAP1)

Aliases : RANGAP1, ATRANGAP1

Description : RAN GTPase activating protein 1

Gene families : OG_01_0002548 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002548_tree ,
OG_02_0002456 (LandPlants) Phylogenetic Tree(s): OG_02_0002456_tree ,
OG_03_0002558 (SeedPlants) Phylogenetic Tree(s): OG_03_0002558_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G63130
Cluster	HCCA: Cluster_262

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01011081001	No alias	RAN GTPase-activating protein 1 OS=Arabidopsis thaliana	0.03	Archaeplastida
MA_10430396g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_83167g0010	No alias	GTPase activating component Ran-GAP of nucleocytoplasmic...	0.06	Archaeplastida
Pp3c7_9140V3.1	No alias	RAN GTPase activating protein 1	0.1	Archaeplastida
Solyc01g079680.3.1	No alias	GTPase activating component Ran-GAP of nucleocytoplasmic...	0.05	Archaeplastida
Solyc09g065190.3.1	No alias	GTPase activating component Ran-GAP of nucleocytoplasmic...	0.04	Archaeplastida
GSVIVT01011081001	No alias	RAN GTPase-activating protein 1 OS=Arabidopsis thaliana	0.03	LandPlants
LOC_Os05g46560.1	No alias	GTPase activating component Ran-GAP of nucleocytoplasmic...	0.02	LandPlants
MA_10430396g0010	No alias	no hits & (original description: none)	0.03	LandPlants
MA_83167g0010	No alias	GTPase activating component Ran-GAP of nucleocytoplasmic...	0.06	LandPlants
Pp3c7_9140V3.1	No alias	RAN GTPase activating protein 1	0.07	LandPlants
Solyc01g079680.3.1	No alias	GTPase activating component Ran-GAP of nucleocytoplasmic...	0.04	LandPlants
Solyc09g065190.3.1	No alias	GTPase activating component Ran-GAP of nucleocytoplasmic...	0.04	LandPlants
LOC_Os05g46560.1	No alias	GTPase activating component Ran-GAP of nucleocytoplasmic...	0.02	SeedPlants
MA_10430396g0010	No alias	no hits & (original description: none)	0.03	SeedPlants
MA_83167g0010	No alias	GTPase activating component Ran-GAP of nucleocytoplasmic...	0.06	SeedPlants
Solyc01g079680.3.1	No alias	GTPase activating component Ran-GAP of nucleocytoplasmic...	0.04	SeedPlants
Solyc09g065190.3.1	No alias	GTPase activating component Ran-GAP of nucleocytoplasmic...	0.04	SeedPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0000280	nuclear division	RCA	Interproscan
BP	GO:0000910	cytokinesis	None	Extended
BP	GO:0000911	cytokinesis by cell plate formation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005635	nuclear envelope	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006333	chromatin assembly or disassembly	None	Extended
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0006346	DNA methylation-dependent heterochromatin assembly	RCA	Interproscan
BP	GO:0006405	RNA export from nucleus	None	Extended
BP	GO:0006406	mRNA export from nucleus	RCA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006606	protein import into nucleus	RCA	Interproscan
BP	GO:0006606	protein import into nucleus	TAS	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	None	Extended
BP	GO:0006820	anion transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	RCA	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0006997	nucleus organization	None	Extended
BP	GO:0007000	nucleolus organization	RCA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009404	toxin metabolic process	None	Extended
BP	GO:0009407	toxin catabolic process	RCA	Interproscan
CC	GO:0009504	cell plate	IDA	Interproscan
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
BP	GO:0015931	nucleobase-containing compound transport	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016569	covalent chromatin modification	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	None	Extended
BP	GO:0017038	protein import	None	Extended
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019748	secondary metabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0031048	heterochromatin assembly by small RNA	RCA	Interproscan
BP	GO:0031497	chromatin assembly	None	Extended
BP	GO:0031507	heterochromatin assembly	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
CC	GO:0032153	cell division site	IDA	Interproscan
BP	GO:0032259	methylation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034401	chromatin organization involved in regulation of transcription	None	Extended
BP	GO:0034504	protein localization to nucleus	None	Extended
BP	GO:0034613	cellular protein localization	None	Extended
BP	GO:0034968	histone lysine methylation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042886	amide transport	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048285	organelle fission	None	Extended
BP	GO:0048364	root development	None	Extended
BP	GO:0048527	lateral root development	RCA	Interproscan
BP	GO:0048528	post-embryonic root development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050657	nucleic acid transport	None	Extended
BP	GO:0050658	RNA transport	None	Extended
BP	GO:0051028	mRNA transport	None	Extended
BP	GO:0051168	nuclear export	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051170	import into nucleus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051236	establishment of RNA localization	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051567	histone H3-K9 methylation	RCA	Interproscan
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0061647	histone H3-K9 modification	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0070828	heterochromatin organization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0090696	post-embryonic plant organ development	None	Extended
BP	GO:0097549	chromatin organization involved in negative regulation of transcription	None	Extended
BP	GO:0098754	detoxification	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR025265	WPP_dom	14	108
IPR001611	Leu-rich_rpt	405	426
IPR001611	Leu-rich_rpt	349	370
IPR001611	Leu-rich_rpt	209	230
IPR001611	Leu-rich_rpt	319	342

External Links

No external refs found!

AT3G63130 (RANGAP1, ATRANGAP1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation