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  5. Len_g19221

Len_g19221


Description : NDX-type transcription factor & original description: none


Gene families : OG0003424 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003424_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g19221

Target Alias Description ECC score Gene Family Method Actions
AT4G03090 No alias sequence-specific DNA binding;sequence-specific DNA... 0.02 OrthoFinder output from all 47 species
Ala_g02709 No alias NDX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g22927 No alias NDX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene71080.t1 Aspi01Gene71080 NDX-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.1Z061200.1 Ceric.1Z061200 not classified & original description: pacid=50604630... 0.03 OrthoFinder output from all 47 species
Dcu_g07774 No alias NDX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g08164 No alias NDX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os05g09630.1 LOC_Os05g09630 transcription factor (NDX) 0.03 OrthoFinder output from all 47 species
Mp1g16560.1 No alias transcription factor (NDX) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!