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  5. Len_g19045

Len_g19045


Description : component *(UPF2) of RNA quality control Exon Junction complex & original description: none


Gene families : OG0003692 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003692_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g19045

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00123630 evm_27.TU.AmTr_v1... RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder output from all 47 species
AT2G39260 No alias binding;RNA binding 0.03 OrthoFinder output from all 47 species
Adi_g019654 No alias component *(UPF2) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Ala_g20588 No alias component *(UPF2) of RNA quality control Exon Junction... 0.06 OrthoFinder output from all 47 species
Als_g03890 No alias component *(UPF2) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Azfi_s0287.g063161 No alias component *(UPF2) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Ceric.01G002200.1 Ceric.01G002200 component *(UPF2) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022080.18 No alias Regulator of nonsense transcripts UPF2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dcu_g03185 No alias component *(UPF2) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Ehy_g07950 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
GSVIVT01016353001 No alias RNA processing.RNA quality control Exon Junction complex... 0.09 OrthoFinder output from all 47 species
Gb_41555 No alias component UPF2 of RNA quality control Exon Junction complex 0.08 OrthoFinder output from all 47 species
LOC_Os02g42040.1 LOC_Os02g42040 component UPF2 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Lfl_g03486 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
MA_10437229g0010 No alias component UPF2 of RNA quality control Exon Junction complex 0.05 OrthoFinder output from all 47 species
Mp4g13780.1 No alias component UPF2 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Ore_g06800 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ore_g43616 No alias component *(UPF2) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Pir_g14884 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ppi_g04699 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Sam_g36558 No alias component *(UPF2) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Smo440923 No alias RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder output from all 47 species
Solyc04g049770.4.1 Solyc04g049770 component UPF2 of RNA quality control Exon Junction complex 0.07 OrthoFinder output from all 47 species
Tin_g06695 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Zm00001e023044_P004 Zm00001e023044 component UPF2 of RNA quality control Exon Junction complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003890 MIF4G-like_typ-3 700 894
IPR003890 MIF4G-like_typ-3 498 679
IPR007193 Upf2/Nmd2_C 1028 1161
No external refs found!