Len_g18992 (emb1138)

Aliases : emb1138

Description : group-II intron splicing RNA helicase *(RH3) & original description: none

Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g18992

Target	Alias	Description	ECC score	Gene Family Method
Ala_g14243	PRH75	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aob_g09620	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.06G054800.1	emb1138, Ceric.06G054800	not classified & original description: pacid=50619432...	0.03	OrthoFinder output from all 47 species
Ceric.21G051700.1	emb1138, Ceric.21G051700	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01000821001	PMH2, ATRH53	RNA processing.organelle machineries.RNA...	0.04	OrthoFinder output from all 47 species
Lfl_g38604	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_17924g0010	PRH75	DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Msp_g22012	emb1138	sRNA cargo-loading helicase *(RH11/37) of extracellular...	0.03	OrthoFinder output from all 47 species
Ore_g38810	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g26329	No alias	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Solyc12g006320.3.1	PMH2, ATRH53,...	RNA helicase (PMH)	0.02	OrthoFinder output from all 47 species
Zm00001e003219_P001	PMH2, ATRH53,...	RNA helicase (PMH)	0.04	OrthoFinder output from all 47 species
Zm00001e018107_P001	PMH2, ATRH53,...	RNA helicase (PMH)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
MF	GO:0031625	ubiquitin protein ligase binding	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012562	GUCT	560	657
IPR011545	DEAD/DEAH_box_helicase_dom	156	328
IPR001650	Helicase_C	371	473

External Links

No external refs found!