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  5. Len_g18926

Len_g18926


Description : not classified & original description: none


Gene families : OG0000185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000185_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g18926

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00265700 evm_27.TU.AmTr_v1... RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
Aev_g04093 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03129 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g04310 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g06633 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g17355 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g10637 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g29218 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g62599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0090.g042794 No alias not classified & original description: CDS=151-1857 0.03 OrthoFinder output from all 47 species
Cba_g07339 HEN4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.14G007100.1 Ceric.14G007100 not classified & original description: pacid=50632910... 0.04 OrthoFinder output from all 47 species
Ceric.25G027100.1 Ceric.25G027100 not classified & original description: pacid=50594480... 0.04 OrthoFinder output from all 47 species
Dcu_g12897 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g04932 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g15528 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40850 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g00616 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g32788 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0108.g020404 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.03 OrthoFinder output from all 47 species
Sam_g11931 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15786 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g16383 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g067210.3.1 Solyc02g067210 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc05g007810.3.1 Solyc05g007810 RNA-binding KH domain-containing protein RCF3... 0.05 OrthoFinder output from all 47 species
Tin_g02804 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e010096_P002 Zm00001e010096 KH domain-containing protein HEN4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e037033_P001 Zm00001e037033 RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
CC GO:0008303 caspase complex IEP HCCA
BP GO:0016255 attachment of GPI anchor to protein IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0042765 GPI-anchor transamidase complex IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
CC GO:0070449 elongin complex IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 164 231
IPR004088 KH_dom_type_1 59 108
IPR004088 KH_dom_type_1 384 452
IPR004088 KH_dom_type_1 300 346
No external refs found!