AT3G62310


Description : RNA helicase family protein


Gene families : OG_01_0000159 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000159_tree ,
OG_02_0003517 (LandPlants) Phylogenetic Tree(s): OG_02_0003517_tree ,
OG_03_0003536 (SeedPlants) Phylogenetic Tree(s): OG_03_0003536_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G62310
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00090p00083520 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
Cpa|evm.model.tig00000842.2 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Cpa|evm.model.tig00021589.28 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Cre03.g182950 No alias RNA processing.RNA splicing.spliceosome... 0.01 Archaeplastida
GSVIVT01010362001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
LOC_Os01g11370.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 Archaeplastida
LOC_Os03g19960.1 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.04 Archaeplastida
LOC_Os06g09280.1 No alias RNA helicase (Prp22) 0.03 Archaeplastida
LOC_Os07g32430.1 No alias RNA helicase (Prp16) 0.05 Archaeplastida
MA_10434449g0010 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 Archaeplastida
MA_10435486g0020 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.05 Archaeplastida
Mp4g02780.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 Archaeplastida
Pp3c23_5290V3.1 No alias RNA helicase family protein 0.03 Archaeplastida
Pp3c24_1890V3.1 No alias RNA helicase family protein 0.02 Archaeplastida
Smo82212 No alias RNA processing.RNA splicing.spliceosome... 0.03 Archaeplastida
Solyc01g110990.2.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc04g014210.3.1 No alias E3 ubiquitin ligase (RBR-Helicase) 0.04 Archaeplastida
Solyc09g008120.4.1 No alias RNA helicase (Prp22) 0.06 Archaeplastida
Solyc09g097820.3.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
Zm00001e022095_P001 No alias RNA helicase (Prp2) 0.03 Archaeplastida
Zm00001e028404_P001 No alias RNA helicase (Prp22) 0.03 Archaeplastida
Zm00001e036358_P005 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
GSVIVT01028153001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 LandPlants
Gb_30670 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 LandPlants
LOC_Os03g19960.1 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 LandPlants
MA_10434449g0010 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 LandPlants
Pp3c24_1890V3.1 No alias RNA helicase family protein 0.02 LandPlants
GSVIVT01028153001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 SeedPlants
Gb_30670 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 SeedPlants
LOC_Os03g19960.1 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 SeedPlants
MA_10434449g0010 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003724 RNA helicase activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005730 nucleolus IDA Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0009560 embryo sac egg cell differentiation RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011709 DUF1605 616 692
IPR001650 Helicase_C 269 403
IPR007502 Helicase-assoc_dom 466 554
IPR011545 DEAD/DEAH_box_helicase_dom 69 226
No external refs found!