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  5. Len_g18001

Len_g18001 (ATHDA19, HDA1, HD1,...)


Aliases : ATHDA19, HDA1, HD1, ATHD1, HDA19, RPD3A

Description : EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & original description: none


Gene families : OG0000827 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000827_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g18001

Target Alias Description ECC score Gene Family Method Actions
Ala_g17266 ATHDA19, HDA1,... EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.04 OrthoFinder output from all 47 species
Dac_g14942 ATHDA19, HDA1,... EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.04 OrthoFinder output from all 47 species
Dcu_g04892 ATHDA19, HDA1,... EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.04 OrthoFinder output from all 47 species
Gb_10850 HDA6, RTS1,... class-I histone deacetylase. deacetylase component HDA19... 0.02 OrthoFinder output from all 47 species
MA_47814g0010 ATHDA19, HDA1,... class-I histone deacetylase 0.02 OrthoFinder output from all 47 species
Msp_g28791 ATHDA19, HDA1,... EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.02 OrthoFinder output from all 47 species
Pnu_g13736 HDA09, HDA9 EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
Sam_g11977 No alias EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
Spa_g18068 ATHDA19, HDA1,... EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.05 OrthoFinder output from all 47 species
Zm00001e022237_P002 HDA6, RTS1,... class-I histone deacetylase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
BP GO:0006784 heme A biosynthetic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016653 oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
BP GO:0046160 heme a metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 61 349
No external refs found!