Smo117159 (PACid_15403291)


Aliases : PACid_15403291

Description : 27.3.85 RNA.regulation of transcription.sigma like plant Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light. RNApolymerase sigma subunit 2 (SIG2) CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma-70 region 1.2 (InterPro:IPR009042), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630) BEST Arabidopsis thaliana protein match is: RNApolymerase sigma-subunit F (TAIR:AT2G36990.1) Has 24116 Blast hits to 24030 proteins in 2811 species: Archae - 0 Bacteria - 17119 Metazoa - 4 Fungi - 2 Plants - 243 Viruses - 12 Other Eukaryotes - 6736 (source: NCBI BLink). & (loc_os03g16430.2 : 213.0


Gene families : OG_01_0001192 (Gene family) Phylogenetic Tree(s): OG0001192_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo117159
Cluster HCCA cluster: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AT1G08540 ATSIG1, SIGB,... RNApolymerase sigma subunit 2 0.06 Gene family
AT2G36990 SIGF, SIG6,... RNApolymerase sigma-subunit F 0.08 Gene family
AT3G53920 SIGC, SIG3 RNApolymerase sigma-subunit C 0.03 Gene family
Cpa|evm.model.tig00000842.1 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.01 Gene family
GSVIVT01019326001 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.04 Gene family
GSVIVT01025717001 No alias No description available 0.02 Gene family
GSVIVT01035330001 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.04 Gene family
LOC_Os03g16430 Os03g0271100 27.3.85 RNA.regulation of transcription.sigma like plant... 0.02 Gene family
LOC_Os08g14450 Os08g0242800,... No description available 0.05 Gene family
LOC_Os11g26160 Os11g0448400 27.3.85 RNA.regulation of transcription.sigma like plant... 0.06 Gene family
MA_10429585g0010 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.04 Gene family
Solyc01g081490.3.1 Solyc01g081490.3 27.3.85 RNA.regulation of transcription.sigma like plant... 0.03 Gene family
Solyc08g065970.3.1 Solyc08g065970.3 27.3.85 RNA.regulation of transcription.sigma like plant... 0.01 Gene family
Solyc09g008040.3.1 Solyc09g008040.3 No description available 0.04 Gene family
Zm00001d012810 GRMZM2G144196 27.3.85 RNA.regulation of transcription.sigma like plant... 0.02 Gene family
Zm00001d028585 GRMZM2G003182,... 27.3.85 RNA.regulation of transcription.sigma like plant... 0.02 Gene family
Zm00001d049160 GRMZM2G143392 27.3.85 RNA.regulation of transcription.sigma like plant... 0.06 Gene family

Type GO Term Name Evidence Source
BP GO:0006352 DNA-templated transcription, initiation IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007627 RNA_pol_sigma70_r2 51 112
No external refs found!