Len_g17147 (TOP1BETA, TOP1)

Aliases : TOP1BETA, TOP1

Description : DNA topoisomerase *(TOP1) & original description: none

Gene families : OG0002461 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002461_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g17147

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00059p00193620	MGO1, TOP1,...	Cell cycle.interphase.DNA replication.preinitiation.TOP1...	0.02	OrthoFinder output from all 47 species
AMTR_s00061p00026580	MGO1, TOP1,...	Cell cycle.interphase.DNA replication.preinitiation.TOP1...	0.02	OrthoFinder output from all 47 species
AT5G55300	MGO1, TOP1, TOP1ALPHA	DNA topoisomerase I alpha	0.03	OrthoFinder output from all 47 species
Ala_g06705	TOP1BETA, TOP1	DNA topoisomerase *(TOP1) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g13391	TOP1BETA, TOP1	DNA topoisomerase *(TOP1) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene51540.t1	MGO1, TOP1,...	DNA topoisomerase *(TOP1) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc07g049720.4.1	MGO1, TOP1,...	DNA topoisomerase (TOP1)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	None	Extended
MF	GO:0003917	DNA topoisomerase type I (single strand cut, ATP-independent) activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR008336	TopoI_DNA-bd_euk	501	712
IPR025834	TopoI_C_dom	974	1043
IPR013500	TopoI_cat_euk	715	938

External Links

No external refs found!

Len_g17147 (TOP1BETA, TOP1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation