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  5. Len_g16879

Len_g16879 (AFP3)


Aliases : AFP3

Description : not classified & original description: none


Gene families : OG0001010 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001010_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g16879

Target Alias Description ECC score Gene Family Method Actions
AT1G69260 AFP1 ABI five binding protein 0.04 OrthoFinder output from all 47 species
AT3G02140 AFP4, TMAC2 AFP2 (ABI five-binding protein 2) family protein 0.02 OrthoFinder output from all 47 species
Dac_g28784 NINJA transcriptional co-repressor *(AFP/NINJA) & original... 0.03 OrthoFinder output from all 47 species
Dde_g28581 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g07044 AFP3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26840 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os03g30570.1 AFP2, LOC_Os03g30570 transcriptional co-repressor (AFP/NINJA) 0.05 OrthoFinder output from all 47 species
Ppi_g03969 NINJA transcriptional co-repressor *(AFP/NINJA) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005309 NINJA transcriptional co-repressor *(AFP/NINJA) & original... 0.03 OrthoFinder output from all 47 species
Spa_g07383 NINJA not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e002002_P001 AFP3, Zm00001e002002 transcriptional co-repressor (AFP/NINJA) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0009987 cellular process IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR032308 TDBD 78 110
No external refs found!