Smo115078 (PACid_15419154)


Aliases : PACid_15419154

Description : 35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein Encodes MRL1, a conserved pentatricopeptide repeat protein, required for stabilization of rbcL mRNA. MATURATION OF RBCL 1 (MRL1) INVOLVED IN: mRNA stabilization LOCATED IN: chloroplast EXPRESSED IN: 21 plant structures EXPRESSED DURING: 13 growth stages CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885) BEST Arabidopsis thaliana protein match is: genomes uncoupled 1 (TAIR:AT2G31400.1) Has 45662 Blast hits to 13867 proteins in 283 species: Archae - 3 Bacteria - 43 Metazoa - 608 Fungi - 635 Plants - 42548 Viruses - 0 Other Eukaryotes - 1825 (source: NCBI BLink). & (loc_os10g10170.2 : 456.0


Gene families : OG_01_0004827 (Gene family) Phylogenetic Tree(s): OG0004827_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo115078
Cluster HCCA cluster: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
AT4G34830 MRL1 Pentatricopeptide repeat (PPR) superfamily protein 0.06 Gene family
GSVIVT01024119001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_10429571g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_122602g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.01 Gene family
Solyc01g111020.3.1 Solyc01g111020.3 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Zm00001d030398 GRMZM2G018929,... 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR033443 PPR_long 141 301
No external refs found!