AT3G59060 (PIL6, PIF5)


Aliases : PIL6, PIF5

Description : phytochrome interacting factor 3-like 6


Gene families : OG_01_0000092 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000092_tree ,
OG_02_0000040 (LandPlants) Phylogenetic Tree(s): OG_02_0000040_tree ,
OG_03_0000031 (SeedPlants) Phylogenetic Tree(s): OG_03_0000031_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G59060
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AT3G50330 HEC2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
AT5G37800 ATRSL1, RSL1 RHD SIX-LIKE 1 0.04 Archaeplastida
GSVIVT01018164001 No alias Transcription factor UNE10 OS=Arabidopsis thaliana 0.06 Archaeplastida
GSVIVT01018165001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.06 Archaeplastida
GSVIVT01020814001 No alias External stimuli response.light.red/far red light.PIF... 0.05 Archaeplastida
GSVIVT01028516001 No alias External stimuli response.light.red/far red light.PIF... 0.04 Archaeplastida
Gb_30387 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os01g02110.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os03g42100.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os06g06900.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
LOC_Os06g10820.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os07g05010.2 No alias transcription factor (bHLH). PIF red/far-red light... 0.03 Archaeplastida
LOC_Os10g40740.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
LOC_Os12g39850.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os12g41650.2 No alias transcription factor (bHLH). PIF red/far-red light... 0.07 Archaeplastida
MA_83500g0010 No alias transcription factor (bHLH) 0.03 Archaeplastida
MA_88831g0010 No alias transcription factor (bHLH) 0.05 Archaeplastida
Mp3g17350.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Pp3c10_19020V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c14_20740V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c14_23520V3.1 No alias phytochrome interacting factor 3 0.04 Archaeplastida
Pp3c17_21890V3.1 No alias phytochrome interacting factor 3 0.03 Archaeplastida
Pp3c1_38820V3.1 No alias phytochrome interacting factor 3 0.03 Archaeplastida
Pp3c1_40040V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Solyc03g115540.2.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Solyc06g069600.3.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Solyc07g043580.4.1 No alias transcription factor (bHLH). PIF red/far-red light... 0.03 Archaeplastida
Solyc09g005070.1.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e005046_P003 No alias transcription factor (bHLH). PIF red/far-red light... 0.04 Archaeplastida
Zm00001e017430_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e025656_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e027758_P002 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e035422_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
AMTR_s00110p00030150 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.02 LandPlants
GSVIVT01018164001 No alias Transcription factor UNE10 OS=Arabidopsis thaliana 0.04 LandPlants
GSVIVT01018165001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 LandPlants
GSVIVT01020814001 No alias External stimuli response.light.red/far red light.PIF... 0.04 LandPlants
GSVIVT01028516001 No alias External stimuli response.light.red/far red light.PIF... 0.03 LandPlants
Gb_12264 No alias transcription factor (bHLH) 0.02 LandPlants
Gb_30387 No alias transcription factor (bHLH) 0.02 LandPlants
LOC_Os06g06900.1 No alias transcription factor (bHLH) 0.03 LandPlants
LOC_Os06g10820.1 No alias transcription factor (bHLH) 0.02 LandPlants
LOC_Os10g40740.1 No alias transcription factor (bHLH) 0.03 LandPlants
LOC_Os12g41650.2 No alias transcription factor (bHLH). PIF red/far-red light... 0.05 LandPlants
Mp3g17350.1 No alias transcription factor (bHLH) 0.02 LandPlants
Mp3g23300.1 No alias transcription factor (bHLH) 0.01 LandPlants
Pp3c14_23520V3.1 No alias phytochrome interacting factor 3 0.03 LandPlants
Pp3c17_21890V3.1 No alias phytochrome interacting factor 3 0.02 LandPlants
Pp3c1_38820V3.1 No alias phytochrome interacting factor 3 0.02 LandPlants
Solyc03g115540.2.1 No alias transcription factor (bHLH) 0.02 LandPlants
Solyc06g062460.3.1 No alias transcription factor (bHLH) 0.02 LandPlants
Solyc06g069600.3.1 No alias transcription factor (bHLH) 0.03 LandPlants
Solyc07g043580.4.1 No alias transcription factor (bHLH). PIF red/far-red light... 0.03 LandPlants
Zm00001e005046_P003 No alias transcription factor (bHLH). PIF red/far-red light... 0.03 LandPlants
AT5G01305 No alias No description available 0.03 SeedPlants
GSVIVT01020814001 No alias External stimuli response.light.red/far red light.PIF... 0.04 SeedPlants
GSVIVT01028516001 No alias External stimuli response.light.red/far red light.PIF... 0.03 SeedPlants
LOC_Os12g41650.2 No alias transcription factor (bHLH). PIF red/far-red light... 0.03 SeedPlants
Solyc06g062460.3.1 No alias transcription factor (bHLH) 0.02 SeedPlants
Zm00001e017430_P001 No alias transcription factor (bHLH) 0.02 SeedPlants
Zm00001e035422_P001 No alias transcription factor (bHLH) 0.01 SeedPlants

Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process RCA Interproscan
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006546 glycine catabolic process RCA Interproscan
BP GO:0006636 unsaturated fatty acid biosynthetic process RCA Interproscan
BP GO:0006733 obsolete oxidoreduction coenzyme metabolic process RCA Interproscan
BP GO:0006766 vitamin metabolic process RCA Interproscan
BP GO:0007623 circadian rhythm RCA Interproscan
BP GO:0008652 cellular amino acid biosynthetic process RCA Interproscan
BP GO:0009072 aromatic amino acid family metabolic process RCA Interproscan
BP GO:0009073 aromatic amino acid family biosynthetic process RCA Interproscan
BP GO:0009106 lipoate metabolic process RCA Interproscan
BP GO:0009108 obsolete coenzyme biosynthetic process RCA Interproscan
BP GO:0009117 nucleotide metabolic process RCA Interproscan
BP GO:0009585 red, far-red light phototransduction IMP Interproscan
BP GO:0009630 gravitropism RCA Interproscan
BP GO:0009684 indoleacetic acid biosynthetic process RCA Interproscan
BP GO:0009693 ethylene biosynthetic process IMP Interproscan
BP GO:0009695 jasmonic acid biosynthetic process RCA Interproscan
BP GO:0009965 leaf morphogenesis RCA Interproscan
BP GO:0010017 red or far-red light signaling pathway RCA Interproscan
BP GO:0010600 regulation of auxin biosynthetic process IDA Interproscan
BP GO:0010928 regulation of auxin mediated signaling pathway IDA Interproscan
BP GO:0015995 chlorophyll biosynthetic process RCA Interproscan
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway RCA Interproscan
BP GO:0019344 cysteine biosynthetic process RCA Interproscan
BP GO:0019748 secondary metabolic process RCA Interproscan
BP GO:0019761 glucosinolate biosynthetic process RCA Interproscan
BP GO:0030003 cellular cation homeostasis RCA Interproscan
BP GO:0030154 cell differentiation RCA Interproscan
BP GO:0044272 sulfur compound biosynthetic process RCA Interproscan
BP GO:0045893 positive regulation of transcription, DNA-templated RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011598 bHLH_dom 260 306
No external refs found!