AT3G59040


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0008036 (Archaeplastida) Phylogenetic Tree(s): OG_01_0008036_tree ,
OG_02_0007862 (LandPlants) Phylogenetic Tree(s): OG_02_0007862_tree ,
OG_03_0010058 (SeedPlants) Phylogenetic Tree(s): OG_03_0010058_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G59040
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01020809001 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.15 Archaeplastida
Gb_12237 No alias plastidial RNA processing factor (PPR287) 0.06 Archaeplastida
LOC_Os08g09270.1 No alias plastidial RNA processing factor (PPR287) 0.17 Archaeplastida
MA_10437236g0010 No alias plastidial RNA processing factor (PPR287) 0.05 Archaeplastida
Mp6g14500.1 No alias plastidial RNA processing factor (PPR287) 0.1 Archaeplastida
Pp3c26_11100V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.19 Archaeplastida
Smo448320 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.05 Archaeplastida
Solyc07g043600.4.1 No alias plastidial RNA processing factor (PPR287) 0.18 Archaeplastida
Zm00001e039973_P002 No alias plastidial RNA processing factor (PPR287) 0.02 Archaeplastida
AMTR_s00092p00083700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g59040... 0.02 LandPlants
GSVIVT01020809001 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.15 LandPlants
Gb_12237 No alias plastidial RNA processing factor (PPR287) 0.06 LandPlants
LOC_Os08g09270.1 No alias plastidial RNA processing factor (PPR287) 0.17 LandPlants
MA_10437236g0010 No alias plastidial RNA processing factor (PPR287) 0.05 LandPlants
Mp6g14500.1 No alias plastidial RNA processing factor (PPR287) 0.09 LandPlants
Pp3c26_11100V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.19 LandPlants
Smo448320 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.03 LandPlants
Solyc07g043600.4.1 No alias plastidial RNA processing factor (PPR287) 0.17 LandPlants
Zm00001e039973_P002 No alias plastidial RNA processing factor (PPR287) 0.02 LandPlants
AMTR_s00092p00083700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g59040... 0.01 SeedPlants
GSVIVT01020809001 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.15 SeedPlants
Gb_12237 No alias plastidial RNA processing factor (PPR287) 0.05 SeedPlants
LOC_Os08g09270.1 No alias plastidial RNA processing factor (PPR287) 0.16 SeedPlants
MA_10437236g0010 No alias plastidial RNA processing factor (PPR287) 0.03 SeedPlants
Solyc07g043600.4.1 No alias plastidial RNA processing factor (PPR287) 0.16 SeedPlants
Zm00001e039973_P002 No alias plastidial RNA processing factor (PPR287) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0006098 pentose-phosphate shunt RCA Interproscan
BP GO:0006364 rRNA processing RCA Interproscan
BP GO:0006399 tRNA metabolic process RCA Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0009507 chloroplast ISM Interproscan
BP GO:0009658 chloroplast organization RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 144 169
IPR002885 Pentatricopeptide_repeat 458 485
IPR002885 Pentatricopeptide_repeat 300 359
IPR002885 Pentatricopeptide_repeat 382 431
IPR002885 Pentatricopeptide_repeat 172 219
IPR002885 Pentatricopeptide_repeat 245 289
No external refs found!