- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : CP24, LHCB6
Description : component *(LHCb6) of LHC-II complex & original description: none
Gene families : OG0003880 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003880_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00009p00268360 | CP24, LHCB6,... | Photosynthesis.photophosphorylation.photosystem... | 0.07 | OrthoFinder output from all 47 species | |
| AT1G15820 | CP24, LHCB6 | light harvesting complex photosystem II subunit 6 | 0.09 | OrthoFinder output from all 47 species | |
| Adi_g050814 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.11 | OrthoFinder output from all 47 species | |
| Adi_g084972 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Aev_g42764 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g46568 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ala_g04130 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ala_g14893 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Als_g04793 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Als_g08113 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Aob_g08786 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g16767 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aop_g01085 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g13957 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene36777.t1 | CP24, LHCB6,... | component *(LHCb6) of LHC-II complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene38727.t1 | CP24, LHCB6,... | component *(LHCb6) of LHC-II complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Azfi_s0186.g056695 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original... | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g06222 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g07812 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.08G051300.1 | CP24, LHCB6,... | component *(LHCb6) of LHC-II complex & original... | 0.12 | OrthoFinder output from all 47 species | |
| Ceric.26G015400.1 | CP24, LHCB6,... | component *(LHCb6) of LHC-II complex & original... | 0.07 | OrthoFinder output from all 47 species | |
| Dac_g26480 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Dcu_g02505 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.11 | OrthoFinder output from all 47 species | |
| Dcu_g30591 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Dde_g16061 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Dde_g17973 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Ehy_g05483 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01029789001 | CP24, LHCB6 | Photosynthesis.photophosphorylation.photosystem... | 0.1 | OrthoFinder output from all 47 species | |
| Gb_27633 | CP24, LHCB6 | component LHCb6 of LHC-II complex | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os04g38410.1 | CP24, LHCB6,... | component LHCb6 of LHC-II complex | 0.09 | OrthoFinder output from all 47 species | |
| Mp6g01650.1 | CP24, LHCB6 | component LHCb6 of LHC-II complex | 0.12 | OrthoFinder output from all 47 species | |
| Msp_g01460 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Msp_g11766 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Nbi_g03418 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Nbi_g21203 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g10858 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g01878 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g17874 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g05601 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Ppi_g30781 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g14091 | No alias | component *(LHCb6) of LHC-II complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Smo271833 | CP24, LHCB6 | Photosynthesis.photophosphorylation.photosystem... | 0.07 | OrthoFinder output from all 47 species | |
| Solyc01g105030.3.1 | CP24, LHCB6,... | component LHCb6 of LHC-II complex | 0.11 | OrthoFinder output from all 47 species | |
| Solyc01g105050.3.1 | CP24, LHCB6,... | component LHCb6 of LHC-II complex | 0.12 | OrthoFinder output from all 47 species | |
| Spa_g42268 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Spa_g42269 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Spa_g48848 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Spa_g54507 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Spa_g54890 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Tin_g21610 | CP24, LHCB6 | component *(LHCb6) of LHC-II complex & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Zm00001e006561_P001 | CP24, LHCB6,... | component LHCb6 of LHC-II complex | 0.08 | OrthoFinder output from all 47 species | |
| Zm00001e041918_P001 | CP24, LHCB6,... | component LHCb6 of LHC-II complex | 0.08 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| CC | GO:0009521 | photosystem | IEP | HCCA |
| CC | GO:0009522 | photosystem I | IEP | HCCA |
| CC | GO:0009538 | photosystem I reaction center | IEP | HCCA |
| BP | GO:0015979 | photosynthesis | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | HCCA |
| MF | GO:0071949 | FAD binding | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| CC | GO:0098796 | membrane protein complex | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR022796 | Chloroa_b-bind | 79 | 255 |
| No external refs found! |