Len_g14585 (PUB13, ATPUB13)

Aliases : PUB13, ATPUB13

Description : E3 ubiquitin ligase & original description: none

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g14585

Target	Alias	Description	ECC score	Gene Family Method
AT1G23030	No alias	ARM repeat superfamily protein	0.02	OrthoFinder output from all 47 species
Adi_g059681	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene31832.t1	PUB13, ATPUB13,...	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene59240.t1	PUB14, ATPUB14,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.35G012000.1	PUB13, ATPUB13,...	E3 ubiquitin ligase & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g35890	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g09056	PUB12, AtPUB12	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g13215	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01021265001	ATPUB17, PUB17	U-box domain-containing protein 17 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01032778001	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula	0.02	OrthoFinder output from all 47 species
Len_g15239	PUB14, ATPUB14	not classified & original description: none	0.04	OrthoFinder output from all 47 species
MA_133008g0010	PUB14, ATPUB14	U-box domain-containing protein 14 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Pir_g01986	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g11295	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g35847	PUB14, ATPUB14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020568	PUB13, ATPUB13	E3 ubiquitin ligase & original description: CDS=347-2224	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0117.g021169	No alias	not classified & original description: CDS=1-882	0.03	OrthoFinder output from all 47 species
Zm00001e023475_P001	Zm00001e023475	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
BP	GO:0032392	DNA geometric change	IEP	HCCA
BP	GO:0032508	DNA duplex unwinding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	384	423
IPR000225	Armadillo	549	583
IPR000225	Armadillo	426	464
IPR000225	Armadillo	467	505
IPR003613	Ubox_domain	257	326
IPR045766	MCAfunc	27	138

External Links

No external refs found!

Len_g14585 (PUB13, ATPUB13)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation