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  5. Len_g14318

Len_g14318


Description : plastidial RNA splicing factor *(HPE1) & original description: none


Gene families : OG0007581 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007581_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g14318

Target Alias Description ECC score Gene Family Method Actions
AT1G70200 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Adi_g012143 No alias plastidial RNA splicing factor *(HPE1) & original... 0.04 OrthoFinder output from all 47 species
Aev_g01358 No alias plastidial RNA splicing factor *(HPE1) & original... 0.03 OrthoFinder output from all 47 species
Als_g57142 No alias plastidial RNA splicing factor *(HPE1) & original... 0.05 OrthoFinder output from all 47 species
Dde_g26366 No alias plastidial RNA splicing factor *(HPE1) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g01458 No alias plastidial RNA splicing factor *(HPE1) & original... 0.07 OrthoFinder output from all 47 species
GSVIVT01020168001 No alias RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
LOC_Os02g22070.1 LOC_Os02g22070 HPE1 plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species
MA_10435608g0010 No alias HPE1 plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Msp_g01582 No alias plastidial RNA splicing factor *(HPE1) & original... 0.06 OrthoFinder output from all 47 species
Pir_g16008 No alias plastidial RNA splicing factor *(HPE1) & original... 0.03 OrthoFinder output from all 47 species
Spa_g30782 No alias plastidial RNA splicing factor *(HPE1) & original... 0.05 OrthoFinder output from all 47 species
Zm00001e013842_P001 Zm00001e013842 HPE1 plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA

No InterPro domains available for this sequence

No external refs found!