AT3G57800

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG_01_0000051 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000051_tree ,
OG_02_0000091 (LandPlants) Phylogenetic Tree(s): OG_02_0000091_tree ,
OG_03_0010863 (SeedPlants) Phylogenetic Tree(s): OG_03_0010863_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G57800
Cluster	HCCA: Cluster_224

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00013p00245920	evm_27.TU.AmTr_v1...	External stimuli response.light.UV-A/blue...	0.05	Archaeplastida
AMTR_s00133p00027110	evm_27.TU.AmTr_v1...	External stimuli response.light.UV-A/blue...	0.04	Archaeplastida
AT4G34530	CIB1	cryptochrome-interacting basic-helix-loop-helix 1	0.04	Archaeplastida
GSVIVT01007389001	No alias	External stimuli response.light.UV-A/blue...	0.02	Archaeplastida
GSVIVT01023585001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
GSVIVT01023783001	No alias	External stimuli response.light.UV-A/blue...	0.06	Archaeplastida
GSVIVT01033356001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
Gb_12493	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
LOC_Os01g67480.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
LOC_Os01g68700.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
LOC_Os06g41060.1	No alias	transcription factor (bHLH)	0.09	Archaeplastida
LOC_Os09g31300.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Pp3c18_6880V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	Archaeplastida
Smo443113	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
Solyc04g007300.4.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.05	Archaeplastida
Solyc09g057710.4.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	Archaeplastida
Solyc09g097870.4.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
Zm00001e009823_P002	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e018857_P002	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
Zm00001e021418_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e030519_P003	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	Archaeplastida
Zm00001e034605_P003	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
AMTR_s00013p00245920	evm_27.TU.AmTr_v1...	External stimuli response.light.UV-A/blue...	0.04	LandPlants
AMTR_s00133p00027110	evm_27.TU.AmTr_v1...	External stimuli response.light.UV-A/blue...	0.04	LandPlants
AT1G10120	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	LandPlants
GSVIVT01010126001	No alias	External stimuli response.light.UV-A/blue...	0.02	LandPlants
GSVIVT01021032001	No alias	External stimuli response.light.UV-A/blue...	0.03	LandPlants
GSVIVT01023783001	No alias	External stimuli response.light.UV-A/blue...	0.06	LandPlants
Gb_12493	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.02	LandPlants
LOC_Os06g41060.1	No alias	transcription factor (bHLH)	0.07	LandPlants
Solyc02g062690.3.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.02	LandPlants
Solyc04g007300.4.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	LandPlants
Solyc05g006650.3.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.02	LandPlants
Solyc09g057710.4.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	LandPlants
Solyc09g097870.4.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	LandPlants
Zm00001e003701_P003	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.02	LandPlants
Zm00001e018857_P002	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	LandPlants
Zm00001e021418_P001	No alias	no hits & (original description: none)	0.02	LandPlants
Zm00001e030519_P003	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	LandPlants
Zm00001e034605_P003	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	LandPlants
LOC_Os06g41060.1	No alias	transcription factor (bHLH)	0.07	SeedPlants
Zm00001e030519_P003	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	214	245

External Links

No external refs found!

AT3G57800

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation