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  5. Len_g13930

Len_g13930


Description : protein factor (NERD) of non-canonical RdDM pathway & original description: none


Gene families : OG0001217 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001217_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g13930

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00027p00244500 evm_27.TU.AmTr_v1... Zinc finger CCCH domain-containing protein 19... 0.03 OrthoFinder output from all 47 species
AT3G51120 No alias DNA binding;zinc ion binding;nucleic acid... 0.03 OrthoFinder output from all 47 species
Adi_g007808 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Adi_g026023 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g027452 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g106014 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g13646 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Azfi_s0212.g058205 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Cba_g74669 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Ceric.03G088800.1 Ceric.03G088800 not classified & original description: pacid=50572957... 0.04 OrthoFinder output from all 47 species
Ceric.09G099900.1 Ceric.09G099900 protein factor (NERD) of non-canonical RdDM pathway &... 0.04 OrthoFinder output from all 47 species
Dac_g09152 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Ehy_g05103 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
GSVIVT01023195001 No alias Zinc finger CCCH domain-containing protein 19... 0.03 OrthoFinder output from all 47 species
GSVIVT01024181001 No alias Zinc finger CCCH domain-containing protein 19... 0.05 OrthoFinder output from all 47 species
Gb_13135 No alias Zinc finger CCCH domain-containing protein 19... 0.02 OrthoFinder output from all 47 species
LOC_Os05g34790.1 LOC_Os05g34790 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os10g36810.1 LOC_Os10g36810 protein factor (NERD) of non-canonical RdDM pathway 0.04 OrthoFinder output from all 47 species
Lfl_g35904 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_116694g0010 No alias Zinc finger CCCH domain-containing protein 19... 0.03 OrthoFinder output from all 47 species
MA_12806g0020 No alias protein factor (NERD) of non-canonical RdDM pathway 0.04 OrthoFinder output from all 47 species
Ore_g10283 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16785 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Ore_g45316 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Pir_g06499 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Pir_g12625 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Ppi_g49417 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.04 OrthoFinder output from all 47 species
Ppi_g58382 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0078.g017691 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.05 OrthoFinder output from all 47 species
Sam_g52359 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.04 OrthoFinder output from all 47 species
Spa_g15744 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.04 OrthoFinder output from all 47 species
Spa_g30973 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.02 OrthoFinder output from all 47 species
Spa_g49491 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.04 OrthoFinder output from all 47 species
Tin_g09943 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.05 OrthoFinder output from all 47 species
Tin_g43997 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Zm00001e000091_P002 Zm00001e000091 protein factor (NERD) of non-canonical RdDM pathway 0.06 OrthoFinder output from all 47 species
Zm00001e019791_P001 Zm00001e019791 protein factor (NERD) of non-canonical RdDM pathway 0.03 OrthoFinder output from all 47 species
Zm00001e029059_P002 Zm00001e029059 protein factor (NERD) of non-canonical RdDM pathway 0.03 OrthoFinder output from all 47 species
Zm00001e039077_P001 Zm00001e039077 protein factor (NERD) of non-canonical RdDM pathway 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004559 alpha-mannosidase activity IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006013 mannose metabolic process IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
InterPro domains Description Start Stop
IPR003121 SWIB_MDM2_domain 1059 1133
IPR003169 GYF 1664 1704
IPR004343 Plus-3_dom 1196 1298
No external refs found!