Len_g13705

Description : component *(NOT2) of mRNA deadenylation CCR4-NOT complex & original description: none

Gene families : OG0002132 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002132_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g13705

Target	Alias	Description	ECC score	Gene Family Method
Adi_g057086	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.03	OrthoFinder output from all 47 species
Aop_g13368	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020554.138	No alias	RNA processing.RNA decay.deadenylation-dependent...	0.01	OrthoFinder output from all 47 species
Dde_g31803	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.03	OrthoFinder output from all 47 species
GSVIVT01025059001	No alias	RNA processing.RNA decay.deadenylation-dependent...	0.02	OrthoFinder output from all 47 species
Gb_41036	No alias	component NOT2 of mRNA deadenylation CCR4-NOT complex	0.01	OrthoFinder output from all 47 species
Lfl_g03249	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.03	OrthoFinder output from all 47 species
Lfl_g09185	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.03	OrthoFinder output from all 47 species
Pnu_g20979	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.03	OrthoFinder output from all 47 species
Sam_g06699	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Zm00001e031975_P003	VIP2, AtVIP2,...	component NOT2 of mRNA deadenylation CCR4-NOT complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005338	nucleotide-sugar transmembrane transporter activity	IEP	HCCA
MF	GO:0015165	pyrimidine nucleotide-sugar transmembrane transporter activity	IEP	HCCA
BP	GO:0015780	nucleotide-sugar transmembrane transport	IEP	HCCA
BP	GO:0015931	nucleobase-containing compound transport	IEP	HCCA
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	HCCA
MF	GO:0016409	palmitoyltransferase activity	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0090481	pyrimidine nucleotide-sugar transmembrane transport	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
BP	GO:1901264	carbohydrate derivative transport	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007282	NOT2/3/5_C	562	680

External Links

No external refs found!