Len_g13257 (RPL4)

Aliases : RPL4

Description : component *(uL4c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0007896 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007896_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g13257
Cluster	HCCA: Cluster_43

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00221060	RPL4,...	Protein biosynthesis.organelle translation...	0.07	OrthoFinder output from all 47 species
AT1G07320	RPL4	ribosomal protein L4	0.1	OrthoFinder output from all 47 species
Adi_g078975	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ala_g05983	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Als_g20889	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Aob_g13415	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Aop_g05120	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Aspi01Gene15325.t1	RPL4, Aspi01Gene15325	component *(uL4c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Azfi_s0056.g034220	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Cba_g34049	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.09G057300.1	RPL4, Ceric.09G057300	component *(uL4c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Cre11.g479500	RPL4	Protein biosynthesis.organelle translation...	0.1	OrthoFinder output from all 47 species
Dac_g21787	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Dcu_g06106	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Dde_g06392	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ehy_g02216	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
GSVIVT01024788001	RPL4	50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum	0.05	OrthoFinder output from all 47 species
Gb_03469	RPL4	component psRPL4 of large ribosomal subunit proteome	0.07	OrthoFinder output from all 47 species
LOC_Os03g15870.1	RPL4, LOC_Os03g15870	component psRPL4 of large ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species
Lfl_g01030	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
MA_2315568g0010	RPL4	50S ribosomal protein L4, chloroplastic OS=Nicotiana...	0.04	OrthoFinder output from all 47 species
Mp1g18940.1	RPL4	component psRPL4 of large ribosomal subunit proteome	0.12	OrthoFinder output from all 47 species
Msp_g19825	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Nbi_g14226	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ore_g08496	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Pir_g19924	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Pnu_g10727	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ppi_g15929	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0219.g026142	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Solyc07g061900.3.1	RPL4, Solyc07g061900	component psRPL4 of large ribosomal subunit proteome	0.12	OrthoFinder output from all 47 species
Spa_g08728	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Tin_g24110	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Zm00001e001165_P001	RPL4, Zm00001e001165	component psRPL4 of large ribosomal subunit proteome	0.1	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004375	glycine dehydrogenase (decarboxylating) activity	IEP	HCCA
BP	GO:0006544	glycine metabolic process	IEP	HCCA
BP	GO:0006546	glycine catabolic process	IEP	HCCA
BP	GO:0009063	amino acid catabolic process	IEP	HCCA
BP	GO:0009069	serine family amino acid metabolic process	IEP	HCCA
BP	GO:0009071	serine family amino acid catabolic process	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0016054	organic acid catabolic process	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	HCCA
MF	GO:0016642	oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044282	small molecule catabolic process	IEP	HCCA
BP	GO:0046395	carboxylic acid catabolic process	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901606	alpha-amino acid catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002136	Ribosomal_L4/L1e	109	286

External Links

No external refs found!

Len_g13257 (RPL4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation