Len_g13066 (EMB3011)

Aliases : EMB3011

Description : RNA helicase *(Prp16) & original description: none

Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g13066

Target	Alias	Description	ECC score	Gene Family Method
AT2G35340	MEE29	helicase domain-containing protein	0.04	OrthoFinder output from all 47 species
Adi_g060167	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g11422	No alias	RNA helicase *(Prp22) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g11608	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g19131	EMB3011	RNA helicase *(Prp16) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g15706	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g04257	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g13014	EMB3011	RNA helicase *(Prp16) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.25G032700.1	Ceric.25G032700	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.04	OrthoFinder output from all 47 species
Ceric.37G064800.1	ESP3, EMB2733,...	RNA helicase *(Prp2) & original description:...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000984.27	ESP3, EMB2733	Pre-mRNA-splicing factor ATP-dependent RNA helicase...	0.01	OrthoFinder output from all 47 species
Cre07.g349100	ESP3, EMB2733	RNA processing.RNA splicing.spliceosome...	0.02	OrthoFinder output from all 47 species
Dac_g11433	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.03	OrthoFinder output from all 47 species
Dac_g30923	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01007911001	ESP3, EMB2733	Pre-mRNA-splicing factor ATP-dependent RNA helicase...	0.03	OrthoFinder output from all 47 species
LOC_Os01g11370.1	LOC_Os01g11370	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	OrthoFinder output from all 47 species
LOC_Os02g19860.1	LOC_Os02g19860	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.02	OrthoFinder output from all 47 species
LOC_Os08g24760.1	ESP3, EMB2733,...	RNA helicase (Prp2)	0.02	OrthoFinder output from all 47 species
Msp_g15088	No alias	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Msp_g16012	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g03086	No alias	RNA helicase *(Prp22) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g30533	No alias	RNA helicase *(Prp22) & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g17507	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g05341	EMB3011	RNA helicase *(Prp16) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g25079	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g07103	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g12381	No alias	RNA helicase *(Prp22) & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g01282	EMB3011	RNA helicase *(Prp16) & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g02893	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e022095_P001	ESP3, EMB2733,...	RNA helicase (Prp2)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0030246	carbohydrate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	807	930
IPR007502	Helicase-assoc_dom	993	1079
IPR011545	DEAD/DEAH_box_helicase_dom	605	758
IPR011709	DEAD-box_helicase_OB_fold	1138	1215

External Links

No external refs found!

Len_g13066 (EMB3011)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation