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  5. Len_g12977

Len_g12977 (CID12, ATRBP37, RBP37)


Aliases : CID12, ATRBP37, RBP37

Description : not classified & original description: none


Gene families : OG0000804 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000804_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g12977
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
Adi_g088810 CID8 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g13697 CID12, ATRBP37, RBP37 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g40102 CID12, ATRBP37, RBP37 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g01661 CID12, ATRBP37, RBP37 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g37569 CID12, ATRBP37, RBP37 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Mp4g11450.3 CID12, ATRBP37, RBP37 Polyadenylate-binding protein-interacting protein 11... 0.02 OrthoFinder output from all 47 species
Nbi_g09538 CID12, ATRBP37, RBP37 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10941 CID12, ATRBP37, RBP37 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57945 CID12, ATRBP37, RBP37 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g02187 CID12, ATRBP37, RBP37 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25451 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04083 CID12, ATRBP37, RBP37 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e016496_P002 CID9, Zm00001e016496 Polyadenylate-binding protein-interacting protein 9... 0.03 OrthoFinder output from all 47 species
Zm00001e026028_P001 CID9, Zm00001e026028 Polyadenylate-binding protein-interacting protein 9... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 327 393
IPR000504 RRM_dom 230 292
IPR009818 Ataxin-2_C 175 188
No external refs found!