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  5. Len_g12772

Len_g12772


Description : not classified & original description: none


Gene families : OG0006545 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006545_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g12772

Target Alias Description ECC score Gene Family Method Actions
AT3G23020 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g014933 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g05556 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.27G000500.1 Ceric.27G000500 not classified & original description: pacid=50606226... 0.07 OrthoFinder output from all 47 species
Dcu_g09918 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g06710.1 LOC_Os03g06710 Pentatricopeptide repeat-containing protein At3g23020... 0.03 OrthoFinder output from all 47 species
LOC_Os07g28900.1 LOC_Os07g28900 Pentatricopeptide repeat-containing protein At1g73710... 0.03 OrthoFinder output from all 47 species
Ppi_g15290 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo77736 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.03 OrthoFinder output from all 47 species
Solyc09g083110.3.1 Solyc09g083110 Pentatricopeptide repeat-containing protein At3g23020... 0.03 OrthoFinder output from all 47 species
Tin_g09786 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 583 609
IPR002885 Pentatricopeptide_repeat 413 435
IPR002885 Pentatricopeptide_repeat 621 648
IPR002885 Pentatricopeptide_repeat 686 725
IPR002885 Pentatricopeptide_repeat 791 833
IPR002885 Pentatricopeptide_repeat 302 345
IPR002885 Pentatricopeptide_repeat 152 197
IPR002885 Pentatricopeptide_repeat 233 278
IPR033443 PPR_long 457 564
No external refs found!