Len_g12700

Description : component *(cS23) of small plastid ribosomal-subunit proteome & original description: none

Gene families : OG0003343 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003343_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g12700
Cluster	HCCA: Cluster_116

Target	Alias	Description	ECC score	Gene Family Method
Als_g28969	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aop_g18177	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Azfi_s0052.g031601	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Azfi_s0405.g068388	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Cba_g17074	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Cba_g32123	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g02540	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
LOC_Os04g38750.1	LOC_Os04g38750	component psPSRP3 of small ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species
Mp2g13520.1	No alias	component psPSRP3 of small ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species
Nbi_g11760	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Zm00001e007903_P001	Zm00001e007903	component psPSRP3 of small ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species
Zm00001e041019_P001	Zm00001e041019	component psPSRP3 of small ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	HCCA
BP	GO:0006534	cysteine metabolic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
BP	GO:0009069	serine family amino acid metabolic process	IEP	HCCA
BP	GO:0009092	homoserine metabolic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009522	photosystem I	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
BP	GO:0019346	transsulfuration	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
BP	GO:0050667	homocysteine metabolic process	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006924	Ribosomal_PSRP3/Ycf65	95	133

External Links

No external refs found!

Len_g12700

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation