AT3G55730 (AtMYB109, MYB109)

Aliases : AtMYB109, MYB109

Description : myb domain protein 109

Gene families : OG_01_0000002 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0000116 (LandPlants) Phylogenetic Tree(s): OG_02_0000116_tree ,
OG_03_0000157 (SeedPlants) Phylogenetic Tree(s): OG_03_0000157_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G55730
Cluster	HCCA: Cluster_229

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00079p00143780	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.07	Archaeplastida
Cre03.g144747	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.02	Archaeplastida
GSVIVT01027949001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.04	Archaeplastida
GSVIVT01030434001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.04	Archaeplastida
Gb_15814	No alias	transcription factor (MYB)	0.03	Archaeplastida
Gb_23921	No alias	transcription factor (MYB)	0.03	Archaeplastida
Gb_34882	No alias	transcription factor (MYB)	0.03	Archaeplastida
Gb_40629	No alias	transcription factor (MYB)	0.04	Archaeplastida
LOC_Os01g16810.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
LOC_Os01g52410.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
LOC_Os03g38210.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
LOC_Os09g36250.1	No alias	transcription factor (MYB)	0.06	Archaeplastida
MA_10426901g0020	No alias	transcription factor (MYB)	0.02	Archaeplastida
MA_10435612g0010	No alias	transcription factor (MYB)	0.02	Archaeplastida
MA_173523g0010	No alias	transcription factor (MYB)	0.02	Archaeplastida
MA_37851g0010	No alias	transcription factor (MYB)	0.03	Archaeplastida
MA_62361g0010	No alias	transcription factor (MYB)	0.05	Archaeplastida
MA_6277697g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
Pp3c13_8880V3.1	No alias	myb domain protein 4r1	0.02	Archaeplastida
Pp3c15_1270V3.1	No alias	myb domain protein 86	0.05	Archaeplastida
Pp3c15_24080V3.1	No alias	myb domain protein 33	0.01	Archaeplastida
Pp3c19_20750V3.1	No alias	myb domain protein 20	0.03	Archaeplastida
Pp3c7_23450V3.1	No alias	myb domain protein 106	0.02	Archaeplastida
Pp3c7_23490V3.1	No alias	myb domain protein 106	0.02	Archaeplastida
Smo77255	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
Solyc01g009070.3.1	No alias	transcription factor (MYB)	0.09	Archaeplastida
Zm00001e001404_P001	No alias	transcription factor (MYB)	0.02	Archaeplastida
Zm00001e001409_P001	No alias	transcription factor (MYB)	0.02	Archaeplastida
Zm00001e005507_P001	No alias	transcription factor (MYB)	0.02	Archaeplastida
Zm00001e019110_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e030314_P001	No alias	transcription factor (MYB)	0.02	Archaeplastida
Zm00001e035652_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	None	Extended
BP	GO:0000302	response to reactive oxygen species	None	Extended
BP	GO:0000303	response to superoxide	RCA	Interproscan
BP	GO:0000305	response to oxygen radical	None	Extended
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005737	cytoplasm	IDA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0006979	response to oxidative stress	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	IEP	Interproscan
BP	GO:0009651	response to salt stress	RCA	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009723	response to ethylene	IEP	Interproscan
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	IEP	Interproscan
BP	GO:0009733	response to auxin	RCA	Interproscan
BP	GO:0009737	response to abscisic acid	IEP	Interproscan
BP	GO:0009737	response to abscisic acid	RCA	Interproscan
BP	GO:0009739	response to gibberellin	IEP	Interproscan
BP	GO:0009743	response to carbohydrate	RCA	Interproscan
BP	GO:0009751	response to salicylic acid	IEP	Interproscan
BP	GO:0009751	response to salicylic acid	RCA	Interproscan
BP	GO:0009753	response to jasmonic acid	IEP	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009873	ethylene-activated signaling pathway	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010090	trichome morphogenesis	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0014070	response to organic cyclic compound	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070542	response to fatty acid	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	56	101
IPR001005	SANT/Myb	108	151

External Links

No external refs found!

AT3G55730 (AtMYB109, MYB109)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation