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Description : component *(bL28c) of large plastid ribosomal-subunit proteome & original description: none
Gene families : OG0006464 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006464_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Len_g11369 | |
| Cluster | HCCA: Cluster_43 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00067p00174670 | evm_27.TU.AmTr_v1... | Protein biosynthesis.organelle translation... | 0.03 | OrthoFinder output from all 47 species | |
| AT2G33450 | No alias | Ribosomal L28 family | 0.1 | OrthoFinder output from all 47 species | |
| Adi_g107767 | No alias | component *(bL28c) of large plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g05691 | No alias | component *(bL28c) of large plastid ribosomal-subunit... | 0.08 | OrthoFinder output from all 47 species | |
| Als_g25918 | No alias | component *(bL28c) of large plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
| Als_g54254 | No alias | component *(bL28c) of large plastid ribosomal-subunit... | 0.06 | OrthoFinder output from all 47 species | |
| Aob_g09499 | No alias | component *(bL28c) of large plastid ribosomal-subunit... | 0.05 | OrthoFinder output from all 47 species | |
| Aop_g69998 | No alias | component *(bL28c) of large plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene26884.t1 | Aspi01Gene26884 | component *(bL28c) of large plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene26911.t1 | Aspi01Gene26911 | component *(bL28c) of large plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0087.g042281 | No alias | component *(bL28c) of large plastid ribosomal-subunit... | 0.07 | OrthoFinder output from all 47 species | |
| Ceric.06G041500.1 | Ceric.06G041500 | component *(bL28c) of large plastid ribosomal-subunit... | 0.07 | OrthoFinder output from all 47 species | |
| Cre06.g265800 | No alias | Protein biosynthesis.organelle translation... | 0.06 | OrthoFinder output from all 47 species | |
| Dac_g00398 | No alias | component *(bL28c) of large plastid ribosomal-subunit... | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g05058 | No alias | component *(bL28c) of large plastid ribosomal-subunit... | 0.05 | OrthoFinder output from all 47 species | |
| Dde_g27683 | No alias | component *(bL28c) of large plastid ribosomal-subunit... | 0.05 | OrthoFinder output from all 47 species | |
| Ehy_g00252 | No alias | component *(bL28c) of large plastid ribosomal-subunit... | 0.11 | OrthoFinder output from all 47 species | |
| GSVIVT01027870001 | No alias | Protein biosynthesis.organelle translation... | 0.13 | OrthoFinder output from all 47 species | |
| Gb_39628 | No alias | component psRPL28 of large ribosomal subunit proteome | 0.07 | OrthoFinder output from all 47 species | |
| LOC_Os05g01110.1 | LOC_Os05g01110 | component psRPL28 of large ribosomal subunit proteome | 0.12 | OrthoFinder output from all 47 species | |
| MA_10426581g0010 | No alias | component psRPL28 of large ribosomal subunit proteome | 0.07 | OrthoFinder output from all 47 species | |
| Mp4g05120.1 | No alias | component psRPL28 of large ribosomal subunit proteome | 0.11 | OrthoFinder output from all 47 species | |
| Ore_g11040 | No alias | component *(bL28c) of large plastid ribosomal-subunit... | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g11041 | No alias | component *(bL28c) of large plastid ribosomal-subunit... | 0.06 | OrthoFinder output from all 47 species | |
| Pir_g58585 | No alias | component *(bL28c) of large plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g03040 | No alias | component *(bL28c) of large plastid ribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g09843 | No alias | component *(bL28c) of large plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
| Pp3c5_28500V3.1 | Pp3c5_28500 | Ribosomal L28 family | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g23667 | No alias | component *(bL28c) of large plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc09g090410.3.1 | Solyc09g090410 | component psRPL28 of large ribosomal subunit proteome | 0.13 | OrthoFinder output from all 47 species | |
| Tin_g00322 | No alias | component *(bL28c) of large plastid ribosomal-subunit... | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e004728_P001 | Zm00001e004728 | component psRPL28 of large ribosomal subunit proteome | 0.12 | OrthoFinder output from all 47 species | |
| Zm00001e012787_P001 | Zm00001e012787 | component psRPL28 of large ribosomal subunit proteome | 0.06 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
| MF | GO:0004601 | peroxidase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005840 | ribosome | IEP | HCCA |
| BP | GO:0006066 | alcohol metabolic process | IEP | HCCA |
| BP | GO:0006412 | translation | IEP | HCCA |
| BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
| BP | GO:0006729 | tetrahydrobiopterin biosynthetic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| MF | GO:0008124 | 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| CC | GO:0009521 | photosystem | IEP | HCCA |
| CC | GO:0009522 | photosystem I | IEP | HCCA |
| CC | GO:0009523 | photosystem II | IEP | HCCA |
| CC | GO:0009538 | photosystem I reaction center | IEP | HCCA |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0015979 | photosynthesis | IEP | HCCA |
| CC | GO:0016020 | membrane | IEP | HCCA |
| MF | GO:0016209 | antioxidant activity | IEP | HCCA |
| MF | GO:0016684 | oxidoreductase activity, acting on peroxide as acceptor | IEP | HCCA |
| MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | IEP | HCCA |
| MF | GO:0016835 | carbon-oxygen lyase activity | IEP | HCCA |
| MF | GO:0016836 | hydro-lyase activity | IEP | HCCA |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| BP | GO:0019751 | polyol metabolic process | IEP | HCCA |
| MF | GO:0019843 | rRNA binding | IEP | HCCA |
| CC | GO:0019898 | extrinsic component of membrane | IEP | HCCA |
| MF | GO:0030145 | manganese ion binding | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| BP | GO:0034311 | diol metabolic process | IEP | HCCA |
| BP | GO:0034312 | diol biosynthetic process | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0042558 | pteridine-containing compound metabolic process | IEP | HCCA |
| BP | GO:0042559 | pteridine-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043169 | cation binding | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043603 | amide metabolic process | IEP | HCCA |
| BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0046146 | tetrahydrobiopterin metabolic process | IEP | HCCA |
| BP | GO:0046165 | alcohol biosynthetic process | IEP | HCCA |
| BP | GO:0046173 | polyol biosynthetic process | IEP | HCCA |
| MF | GO:0046872 | metal ion binding | IEP | HCCA |
| MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
| MF | GO:0051920 | peroxiredoxin activity | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| CC | GO:0098796 | membrane protein complex | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
| BP | GO:1901615 | organic hydroxy compound metabolic process | IEP | HCCA |
| BP | GO:1901617 | organic hydroxy compound biosynthetic process | IEP | HCCA |
| CC | GO:1902494 | catalytic complex | IEP | HCCA |
| CC | GO:1990204 | oxidoreductase complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR026569 | Ribo_L28/L24 | 81 | 140 |
| No external refs found! |