AT3G55200

Description : Cleavage and polyadenylation specificity factor (CPSF) A subunit protein

Gene families : OG_01_0002788 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002788_tree ,
OG_02_0006456 (LandPlants) Phylogenetic Tree(s): OG_02_0006456_tree ,
OG_03_0008766 (SeedPlants) Phylogenetic Tree(s): OG_03_0008766_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G55200
Cluster	HCCA: Cluster_253

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01005970001	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.03	Archaeplastida
Mp7g13330.1	No alias	component SF3B3 of splicing factor 3B complex	0.02	Archaeplastida
Pp3c12_11240V3.1	No alias	Cleavage and polyadenylation specificity factor (CPSF) A...	0.03	Archaeplastida
Pp3c16_16800V3.1	No alias	Cleavage and polyadenylation specificity factor (CPSF) A...	0.04	Archaeplastida
Pp3c4_5190V3.1	No alias	Cleavage and polyadenylation specificity factor (CPSF) A...	0.04	Archaeplastida
Solyc04g010260.3.1	No alias	component SF3B3 of splicing factor 3B complex	0.05	Archaeplastida
GSVIVT01005970001	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.03	LandPlants
Mp7g13330.1	No alias	component SF3B3 of splicing factor 3B complex	0.02	LandPlants
Pp3c12_11240V3.1	No alias	Cleavage and polyadenylation specificity factor (CPSF) A...	0.03	LandPlants
Pp3c16_16800V3.1	No alias	Cleavage and polyadenylation specificity factor (CPSF) A...	0.04	LandPlants
Pp3c4_5190V3.1	No alias	Cleavage and polyadenylation specificity factor (CPSF) A...	0.04	LandPlants
Solyc04g010260.3.1	No alias	component SF3B3 of splicing factor 3B complex	0.04	LandPlants
GSVIVT01005970001	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.03	SeedPlants
Solyc04g010260.3.1	No alias	component SF3B3 of splicing factor 3B complex	0.04	SeedPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009555	pollen development	IMP	Interproscan
BP	GO:0009846	pollen germination	IMP	Interproscan
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048481	plant ovule development	IMP	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR004871	Cleavage/polyA-sp_fac_asu_C	861	1180

External Links

No external refs found!