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  5. Len_g10816

Len_g10816 (ATRPA32B, RPA32B)


Aliases : ATRPA32B, RPA32B

Description : component *(RPA2) of RPA presynaptic filament assembly factor complex & original description: none


Gene families : OG0003036 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003036_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g10816
Cluster HCCA: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
AT2G24490 ATRPA2,... replicon protein A2 0.02 OrthoFinder output from all 47 species
Aev_g18111 ATRPA32B, RPA32B component *(RPA2) of RPA presynaptic filament assembly... 0.04 OrthoFinder output from all 47 species
Ala_g08671 ATRPA32B, RPA32B component *(RPA2) of RPA presynaptic filament assembly... 0.03 OrthoFinder output from all 47 species
Aspi01Gene60045.t1 ATRPA32B,... component *(RPA2) of RPA presynaptic filament assembly... 0.04 OrthoFinder output from all 47 species
Ceric.28G042500.1 ATRPA32B,... component *(RPA2) of RPA presynaptic filament assembly... 0.14 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020684.26 No alias Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.03 OrthoFinder output from all 47 species
Cre02.g100000 ATRPA32B, RPA32B Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.03 OrthoFinder output from all 47 species
Dac_g41142 ATRPA32B, RPA32B component *(RPA2) of RPA presynaptic filament assembly... 0.05 OrthoFinder output from all 47 species
Dcu_g05227 ATRPA32B, RPA32B component *(RPA2) of RPA presynaptic filament assembly... 0.03 OrthoFinder output from all 47 species
GSVIVT01035537001 ATRPA2,... Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.09 OrthoFinder output from all 47 species
Mp5g22240.1 ATRPA32B, RPA32B component RPA2 of single-stranded-DNA binding RPA... 0.04 OrthoFinder output from all 47 species
Msp_g09786 ATRPA32B, RPA32B component *(RPA2) of RPA presynaptic filament assembly... 0.03 OrthoFinder output from all 47 species
Msp_g42535 ATRPA2,... component *(RPA2) of RPA presynaptic filament assembly... 0.03 OrthoFinder output from all 47 species
Pir_g37936 ATRPA2,... component *(RPA2) of RPA presynaptic filament assembly... 0.03 OrthoFinder output from all 47 species
Sam_g01656 No alias component *(RPA2) of RPA presynaptic filament assembly... 0.05 OrthoFinder output from all 47 species
Smo440021 ATRPA2,... Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.02 OrthoFinder output from all 47 species
Solyc07g018300.3.1 ATRPA2,... component RPA2 of single-stranded-DNA binding RPA... 0.08 OrthoFinder output from all 47 species
Solyc10g081830.3.1 ATRPA32B,... component RPA2 of single-stranded-DNA binding RPA... 0.03 OrthoFinder output from all 47 species
Spa_g07704 ATRPA32B, RPA32B component *(RPA2) of RPA presynaptic filament assembly... 0.05 OrthoFinder output from all 47 species
Spa_g07705 ATRPA32B, RPA32B component *(RPA2) of RPA presynaptic filament assembly... 0.07 OrthoFinder output from all 47 species
Spa_g07706 ATRPA32B, RPA32B component *(RPA2) of RPA presynaptic filament assembly... 0.04 OrthoFinder output from all 47 species
Tin_g05426 ATRPA32B, RPA32B component *(RPA2) of RPA presynaptic filament assembly... 0.02 OrthoFinder output from all 47 species
Zm00001e016275_P001 ATRPA2,... component RPA2 of single-stranded-DNA binding RPA... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Clade
Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0007021 tubulin complex assembly IEP HCCA
BP GO:0007023 post-chaperonin tubulin folding pathway IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP HCCA
MF GO:0015020 glucuronosyltransferase activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016872 intramolecular lyase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0048487 beta-tubulin binding IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR014892 RPA_C 183 289
IPR004365 NA-bd_OB_tRNA 77 152
No external refs found!