AT3G54710 (CDT1B, CDT1, ATCDT1B)

Aliases : CDT1B, CDT1, ATCDT1B

Description : homolog of yeast CDT1 B homolog of yeast CDT1 B

Gene families : OG_01_0002838 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002838_tree ,
OG_02_0002106 (LandPlants) Phylogenetic Tree(s): OG_02_0002106_tree ,
OG_03_0001869 (SeedPlants) Phylogenetic Tree(s): OG_03_0001869_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G54710
Cluster	HCCA: Cluster_253

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00171p00068790	evm_27.TU.AmTr_v1...	Cell cycle.interphase.DNA replication.preinitiation.CDT1...	0.03	Archaeplastida
Cre03.g163300	No alias	Cell cycle.interphase.DNA replication.preinitiation.CDT1...	0.02	Archaeplastida
GSVIVT01024251001	No alias	Cell cycle.interphase.DNA replication.preinitiation.CDT1...	0.04	Archaeplastida
LOC_Os10g34820.2	No alias	helicase auxiliary factor (CDT1)	0.02	Archaeplastida
MA_114779g0010	No alias	helicase auxiliary factor (CDT1)	0.03	Archaeplastida
MA_9011g0010	No alias	helicase auxiliary factor (CDT1)	0.04	Archaeplastida
Pp3c19_14181V3.1	No alias	homolog of yeast CDT1 B homolog of yeast CDT1 B	0.03	Archaeplastida
Smo403930	No alias	Cell cycle.interphase.DNA replication.preinitiation.CDT1...	0.05	Archaeplastida
Solyc03g019960.3.1	No alias	helicase auxiliary factor (CDT1)	0.05	Archaeplastida
Solyc06g008510.3.1	No alias	helicase auxiliary factor (CDT1)	0.04	Archaeplastida
Zm00001e004505_P001	No alias	helicase auxiliary factor (CDT1)	0.05	Archaeplastida
Zm00001e036500_P001	No alias	helicase auxiliary factor (CDT1)	0.03	Archaeplastida
Zm00001e041798_P001	No alias	helicase auxiliary factor (CDT1)	0.03	Archaeplastida
AMTR_s00171p00068790	evm_27.TU.AmTr_v1...	Cell cycle.interphase.DNA replication.preinitiation.CDT1...	0.03	LandPlants
GSVIVT01024251001	No alias	Cell cycle.interphase.DNA replication.preinitiation.CDT1...	0.03	LandPlants
MA_114779g0010	No alias	helicase auxiliary factor (CDT1)	0.03	LandPlants
MA_9011g0010	No alias	helicase auxiliary factor (CDT1)	0.04	LandPlants
Pp3c19_14181V3.1	No alias	homolog of yeast CDT1 B homolog of yeast CDT1 B	0.03	LandPlants
Smo403930	No alias	Cell cycle.interphase.DNA replication.preinitiation.CDT1...	0.03	LandPlants
Solyc03g019960.3.1	No alias	helicase auxiliary factor (CDT1)	0.05	LandPlants
Solyc06g008510.3.1	No alias	helicase auxiliary factor (CDT1)	0.04	LandPlants
Zm00001e004505_P001	No alias	helicase auxiliary factor (CDT1)	0.04	LandPlants
Zm00001e036500_P001	No alias	helicase auxiliary factor (CDT1)	0.03	LandPlants
Zm00001e041798_P001	No alias	helicase auxiliary factor (CDT1)	0.03	LandPlants
AMTR_s00171p00068790	evm_27.TU.AmTr_v1...	Cell cycle.interphase.DNA replication.preinitiation.CDT1...	0.02	SeedPlants
GSVIVT01024251001	No alias	Cell cycle.interphase.DNA replication.preinitiation.CDT1...	0.02	SeedPlants
MA_114779g0010	No alias	helicase auxiliary factor (CDT1)	0.03	SeedPlants
MA_9011g0010	No alias	helicase auxiliary factor (CDT1)	0.02	SeedPlants
Solyc03g019960.3.1	No alias	helicase auxiliary factor (CDT1)	0.05	SeedPlants
Solyc06g008510.3.1	No alias	helicase auxiliary factor (CDT1)	0.03	SeedPlants
Zm00001e004505_P001	No alias	helicase auxiliary factor (CDT1)	0.02	SeedPlants
Zm00001e036500_P001	No alias	helicase auxiliary factor (CDT1)	0.03	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004672	protein kinase activity	None	Extended
MF	GO:0004674	protein serine/threonine kinase activity	None	Extended
MF	GO:0004693	cyclin-dependent protein serine/threonine kinase activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006260	DNA replication	IMP	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009657	plastid organization	None	Extended
BP	GO:0009658	chloroplast organization	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016301	kinase activity	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0048229	gametophyte development	IMP	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0051276	chromosome organization	IMP	Interproscan
MF	GO:0070182	DNA polymerase binding	IPI	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097472	cyclin-dependent protein kinase activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR014939	CDT1_Gemini-bd-like	46	159
IPR032054	Cdt1_C	375	451

External Links

No external refs found!

AT3G54710 (CDT1B, CDT1, ATCDT1B)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation