AT3G54230 (SUA)


Aliases : SUA

Description : suppressor of abi3-5


Gene families : OG_01_0004416 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004416_tree ,
OG_02_0004027 (LandPlants) Phylogenetic Tree(s): OG_02_0004027_tree ,
OG_03_0006584 (SeedPlants) Phylogenetic Tree(s): OG_03_0006584_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G54230
Cluster HCCA: Cluster_198

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00089100 evm_27.TU.AmTr_v1... SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01013204001 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana 0.1 Archaeplastida
Gb_28214 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os02g07070.1 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.06 Archaeplastida
MA_188532g0010 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.09 Archaeplastida
Mp1g04870.1 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Pp3c10_21700V3.1 No alias suppressor of abi3-5 0.04 Archaeplastida
Smo407112 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana 0.08 Archaeplastida
Solyc08g077310.3.1 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.07 Archaeplastida
Zm00001e033409_P006 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.06 Archaeplastida
AMTR_s00066p00089100 evm_27.TU.AmTr_v1... SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana 0.04 LandPlants
GSVIVT01013204001 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana 0.08 LandPlants
Gb_28214 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.02 LandPlants
LOC_Os02g07070.1 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.06 LandPlants
MA_188532g0010 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.07 LandPlants
Mp1g04870.1 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.02 LandPlants
Pp3c10_21700V3.1 No alias suppressor of abi3-5 0.02 LandPlants
Smo402018 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana 0.02 LandPlants
Smo407112 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana 0.07 LandPlants
Solyc08g077310.3.1 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.06 LandPlants
Zm00001e033409_P006 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.05 LandPlants
AMTR_s00066p00089100 evm_27.TU.AmTr_v1... SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana 0.04 SeedPlants
GSVIVT01013204001 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana 0.08 SeedPlants
Gb_28214 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.02 SeedPlants
LOC_Os02g07070.1 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.05 SeedPlants
MA_188532g0010 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.06 SeedPlants
Solyc08g077310.3.1 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.06 SeedPlants
Zm00001e033409_P006 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.05 SeedPlants

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IMP Interproscan
BP GO:0000956 nuclear-transcribed mRNA catabolic process RCA Interproscan
MF GO:0003676 nucleic acid binding ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006346 DNA methylation-dependent heterochromatin assembly RCA Interproscan
BP GO:0009616 RNAi-mediated antiviral immune response RCA Interproscan
BP GO:0010050 vegetative phase change RCA Interproscan
BP GO:0010267 production of ta-siRNAs involved in RNA interference RCA Interproscan
BP GO:0016246 RNA interference RCA Interproscan
BP GO:0031048 heterochromatin assembly by small RNA RCA Interproscan
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA RCA Interproscan
BP GO:0051567 histone H3-K9 methylation RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000467 G_patch_dom 929 970
IPR000504 RRM_dom 274 344
IPR000504 RRM_dom 434 499
No external refs found!