AT3G54210

Description : Ribosomal protein L17 family protein

Gene families : OG_01_0005139 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005139_tree ,
OG_02_0005213 (LandPlants) Phylogenetic Tree(s): OG_02_0005213_tree ,
OG_03_0007994 (SeedPlants) Phylogenetic Tree(s): OG_03_0007994_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G54210
Cluster	HCCA: Cluster_130

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00077p00185050	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.01	Archaeplastida
Cpa\|evm.model.tig00000889.52	No alias	Protein biosynthesis.organelle translation...	0.02	Archaeplastida
Cre02.g108850	No alias	Protein biosynthesis.organelle translation...	0.15	Archaeplastida
GSVIVT01037929001	No alias	Protein biosynthesis.organelle translation...	0.2	Archaeplastida
Gb_36007	No alias	component psRPL17 of large ribosomal subunit proteome	0.16	Archaeplastida
LOC_Os03g60100.1	No alias	component psRPL17 of large ribosomal subunit proteome	0.12	Archaeplastida
MA_10429786g0010	No alias	no hits & (original description: none)	0.09	Archaeplastida
MA_263166g0010	No alias	50S ribosomal protein L17, chloroplastic OS=Arabidopsis...	0.04	Archaeplastida
Mp8g05860.1	No alias	component psRPL17 of large ribosomal subunit proteome	0.34	Archaeplastida
Pp3c12_10340V3.1	No alias	Ribosomal protein L17 family protein	0.15	Archaeplastida
Pp3c13_21730V3.1	No alias	Ribosomal protein L17 family protein	0.2	Archaeplastida
Pp3c3_12090V3.1	No alias	Ribosomal protein L17 family protein	0.2	Archaeplastida
Solyc06g082750.3.1	No alias	component psRPL17 of large ribosomal subunit proteome	0.39	Archaeplastida
Solyc06g082760.4.1	No alias	component psRPL17 of large ribosomal subunit proteome	0.23	Archaeplastida
Zm00001e011784_P001	No alias	component psRPL17 of large ribosomal subunit proteome	0.26	Archaeplastida
AMTR_s00077p00185050	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.01	LandPlants
GSVIVT01037929001	No alias	Protein biosynthesis.organelle translation...	0.19	LandPlants
Gb_36007	No alias	component psRPL17 of large ribosomal subunit proteome	0.16	LandPlants
LOC_Os03g60100.1	No alias	component psRPL17 of large ribosomal subunit proteome	0.12	LandPlants
MA_10429786g0010	No alias	no hits & (original description: none)	0.07	LandPlants
MA_263166g0010	No alias	50S ribosomal protein L17, chloroplastic OS=Arabidopsis...	0.03	LandPlants
Mp8g05860.1	No alias	component psRPL17 of large ribosomal subunit proteome	0.32	LandPlants
Pp3c12_10340V3.1	No alias	Ribosomal protein L17 family protein	0.15	LandPlants
Pp3c13_21730V3.1	No alias	Ribosomal protein L17 family protein	0.19	LandPlants
Pp3c3_12090V3.1	No alias	Ribosomal protein L17 family protein	0.2	LandPlants
Solyc06g082750.3.1	No alias	component psRPL17 of large ribosomal subunit proteome	0.39	LandPlants
Solyc06g082760.4.1	No alias	component psRPL17 of large ribosomal subunit proteome	0.24	LandPlants
Zm00001e011784_P001	No alias	component psRPL17 of large ribosomal subunit proteome	0.27	LandPlants
AMTR_s00077p00185050	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.01	SeedPlants
GSVIVT01037929001	No alias	Protein biosynthesis.organelle translation...	0.19	SeedPlants
Gb_36007	No alias	component psRPL17 of large ribosomal subunit proteome	0.15	SeedPlants
LOC_Os03g60100.1	No alias	component psRPL17 of large ribosomal subunit proteome	0.12	SeedPlants
MA_10429786g0010	No alias	no hits & (original description: none)	0.07	SeedPlants
Solyc06g082750.3.1	No alias	component psRPL17 of large ribosomal subunit proteome	0.37	SeedPlants
Solyc06g082760.4.1	No alias	component psRPL17 of large ribosomal subunit proteome	0.24	SeedPlants
Zm00001e011784_P001	No alias	component psRPL17 of large ribosomal subunit proteome	0.27	SeedPlants

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005840	ribosome	ISS	Interproscan
BP	GO:0006081	cellular aldehyde metabolic process	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006090	pyruvate metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006644	phospholipid metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0008654	phospholipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	RCA	Interproscan
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046490	isopentenyl diphosphate metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000456	Ribosomal_L17	115	211

External Links

No external refs found!

AT3G54210

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation