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  5. Len_g10215

Len_g10215 (PSRP6)


Aliases : PSRP6

Description : component *(cL38) of large plastid ribosomal-subunit proteome & original description: none


Gene families : OG0010159 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0010159_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g10215
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Ala_g08605 No alias component *(cL38) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Aop_g69810 PSRP6 component *(cL38) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Azfi_s0384.g067461 PSRP6 component *(cL38) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ceric.28G032900.1 PSRP6, Ceric.28G032900 component *(cL38) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Dde_g25906 PSRP6 component *(cL38) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
LOC_Os11g34940.1 PSRP6, LOC_Os11g34940 component psPSRP6 of large ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
MA_232471g0010 PSRP6 component psPSRP6 of large ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Pir_g08844 No alias component *(cL38) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Ppi_g30450 PSRP6 component *(cL38) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Solyc04g077130.1.1 PSRP6, Solyc04g077130 component psPSRP6 of large ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
CC GO:0009507 chloroplast IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004751 ribose-5-phosphate isomerase activity IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP HCCA
CC GO:0009512 cytochrome b6f complex IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR020526 Ribosomal_L6_chp 56 104
No external refs found!