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  5. Len_g10201

Len_g10201


Description : plant-specific stabilizing component *(ClpT) of chloroplast Clp-type protease complex & original description: none


Gene families : OG0007488 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007488_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g10201
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00213590 evm_27.TU.AmTr_v1... Protein degradation.peptidase families.serine-type... 0.04 OrthoFinder output from all 47 species
AT4G12060 No alias Double Clp-N motif protein 0.07 OrthoFinder output from all 47 species
AT4G25370 No alias Double Clp-N motif protein 0.04 OrthoFinder output from all 47 species
Adi_g100657 No alias plant-specific stabilizing component *(ClpT) of... 0.02 OrthoFinder output from all 47 species
Ala_g22471 No alias plant-specific stabilizing component *(ClpT) of... 0.03 OrthoFinder output from all 47 species
Aob_g02846 No alias plant-specific stabilizing component *(ClpT) of... 0.02 OrthoFinder output from all 47 species
Azfi_s0072.g037001 No alias plant-specific stabilizing component *(ClpT) of... 0.04 OrthoFinder output from all 47 species
Cba_g05046 No alias plant-specific stabilizing component *(ClpT) of... 0.05 OrthoFinder output from all 47 species
Ceric.02G099200.1 Ceric.02G099200 plant-specific stabilizing component *(ClpT) of... 0.04 OrthoFinder output from all 47 species
Dde_g16574 No alias plant-specific stabilizing component *(ClpT) of... 0.05 OrthoFinder output from all 47 species
Ehy_g03326 No alias plant-specific stabilizing component *(ClpT) of... 0.04 OrthoFinder output from all 47 species
GSVIVT01018510001 No alias Protein degradation.peptidase families.serine-type... 0.03 OrthoFinder output from all 47 species
LOC_Os03g14280.1 LOC_Os03g14280 plant-specific stabilizing component ClpT of chloroplast... 0.03 OrthoFinder output from all 47 species
Mp6g19150.1 No alias plant-specific stabilizing component ClpT of chloroplast... 0.12 OrthoFinder output from all 47 species
Nbi_g08875 No alias plant-specific stabilizing component *(ClpT) of... 0.04 OrthoFinder output from all 47 species
Ore_g15428 No alias plant-specific stabilizing component *(ClpT) of... 0.06 OrthoFinder output from all 47 species
Ppi_g32744 No alias plant-specific stabilizing component *(ClpT) of... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007541 No alias plant-specific stabilizing component *(ClpT) of... 0.04 OrthoFinder output from all 47 species
Solyc03g007110.3.1 Solyc03g007110 plant-specific stabilizing component ClpT of chloroplast... 0.03 OrthoFinder output from all 47 species
Solyc08g079660.3.1 Solyc08g079660 plant-specific stabilizing component ClpT of chloroplast... 0.06 OrthoFinder output from all 47 species
Zm00001e001033_P002 Zm00001e001033 plant-specific stabilizing component ClpT of chloroplast... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004109 coproporphyrinogen oxidase activity IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR004176 Clp_R_dom 121 173
IPR004176 Clp_R_dom 209 245
No external refs found!