AT3G53700 (MEE40)


Aliases : MEE40

Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0010963 (Archaeplastida) Phylogenetic Tree(s): OG_01_0010963_tree ,
OG_02_0010911 (LandPlants) Phylogenetic Tree(s): OG_02_0010911_tree ,
OG_03_0010842 (SeedPlants) Phylogenetic Tree(s): OG_03_0010842_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G53700
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00087690 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g53700,... 0.05 Archaeplastida
GSVIVT01025524001 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.13 Archaeplastida
LOC_Os03g40020.1 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.21 Archaeplastida
Solyc09g010450.1.1 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.08 Archaeplastida
Zm00001e004314_P001 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.14 Archaeplastida
AMTR_s00012p00087690 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g53700,... 0.04 LandPlants
GSVIVT01025524001 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.14 LandPlants
LOC_Os03g40020.1 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.2 LandPlants
Solyc09g010450.1.1 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.07 LandPlants
Zm00001e004314_P001 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.14 LandPlants
AMTR_s00012p00087690 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g53700,... 0.04 SeedPlants
GSVIVT01025524001 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.14 SeedPlants
LOC_Os03g40020.1 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.19 SeedPlants
Solyc09g010450.1.1 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.06 SeedPlants
Zm00001e004314_P001 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.12 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
CC GO:0009507 chloroplast IDA Interproscan
BP GO:0009793 embryo development ending in seed dormancy IMP Interproscan
BP GO:0009793 embryo development ending in seed dormancy RCA Interproscan
BP GO:0010027 thylakoid membrane organization RCA Interproscan
BP GO:0010228 vegetative to reproductive phase transition of meristem RCA Interproscan
BP GO:0016226 iron-sulfur cluster assembly RCA Interproscan
BP GO:0048481 plant ovule development RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 398 447
IPR002885 Pentatricopeptide_repeat 328 377
IPR002885 Pentatricopeptide_repeat 469 517
IPR002885 Pentatricopeptide_repeat 611 658
IPR002885 Pentatricopeptide_repeat 260 307
IPR002885 Pentatricopeptide_repeat 542 587
IPR002885 Pentatricopeptide_repeat 187 234
No external refs found!