AT3G53610 (ATRAB8, AtRABE1a,...)

Aliases : ATRAB8, AtRABE1a, AtRab8B, RAB8

Description : RAB GTPase homolog 8

Gene families : OG_01_0000982 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000982_tree ,
OG_02_0000891 (LandPlants) Phylogenetic Tree(s): OG_02_0000891_tree ,
OG_03_0000914 (SeedPlants) Phylogenetic Tree(s): OG_03_0000914_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G53610
Cluster	HCCA: Cluster_260

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000983.30	No alias	Vesicle trafficking.regulation of membrane tethering and...	0.03	Archaeplastida
GSVIVT01025028001	No alias	Vesicle trafficking.regulation of membrane tethering and...	0.03	Archaeplastida
GSVIVT01025619001	No alias	Vesicle trafficking.regulation of membrane tethering and...	0.04	Archaeplastida
LOC_Os05g38630.2	No alias	E-class RAB GTPase	0.03	Archaeplastida
Smo437530	No alias	Vesicle trafficking.regulation of membrane tethering and...	0.02	Archaeplastida
Solyc04g011360.3.1	No alias	E-class RAB GTPase	0.04	Archaeplastida
Solyc10g086350.2.1	No alias	E-class RAB GTPase	0.03	Archaeplastida
GSVIVT01025028001	No alias	Vesicle trafficking.regulation of membrane tethering and...	0.03	LandPlants
GSVIVT01025619001	No alias	Vesicle trafficking.regulation of membrane tethering and...	0.04	LandPlants
Gb_38643	No alias	E-class RAB GTPase	0.02	LandPlants
LOC_Os05g38630.2	No alias	E-class RAB GTPase	0.03	LandPlants
Smo270274	No alias	Vesicle trafficking.regulation of membrane tethering and...	0.02	LandPlants
Solyc10g086350.2.1	No alias	E-class RAB GTPase	0.03	LandPlants
Zm00001e031836_P002	No alias	no hits & (original description: none)	0.02	LandPlants
Zm00001e033170_P001	No alias	E-class RAB GTPase	0.02	LandPlants
GSVIVT01025619001	No alias	Vesicle trafficking.regulation of membrane tethering and...	0.02	SeedPlants
LOC_Os05g38630.2	No alias	E-class RAB GTPase	0.03	SeedPlants
Zm00001e033170_P001	No alias	E-class RAB GTPase	0.02	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0001882	nucleoside binding	None	Extended
MF	GO:0001883	purine nucleoside binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
MF	GO:0005525	GTP binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0016020	membrane	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032549	ribonucleoside binding	None	Extended
MF	GO:0032550	purine ribonucleoside binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	17	178

External Links

No external refs found!