Len_g08870


Description : not classified & original description: none


Gene families : OG0001104 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001104_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g08870

Target Alias Description ECC score Gene Family Method Actions
Adi_g089268 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g10282 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g20063 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05278 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09139 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g09944 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g14176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g17130 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G061400.1 Ceric.01G061400 not classified & original description: pacid=50592672... 0.03 OrthoFinder output from all 47 species
Ceric.03G036200.1 Ceric.03G036200 not classified & original description: pacid=50571952... 0.05 OrthoFinder output from all 47 species
Ceric.11G091600.1 Ceric.11G091600 not classified & original description: pacid=50596008... 0.05 OrthoFinder output from all 47 species
Ceric.19G017900.1 Ceric.19G017900 not classified & original description: pacid=50576444... 0.05 OrthoFinder output from all 47 species
Ceric.26G072600.1 EMB2750, Ceric.26G072600 not classified & original description: pacid=50599096... 0.03 OrthoFinder output from all 47 species
Ceric.39G058300.1 Ceric.39G058300 not classified & original description: pacid=50582561... 0.06 OrthoFinder output from all 47 species
Dac_g22799 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g33413 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g34945 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g39899 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06427 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g30615 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19050 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01019040001 No alias Pentatricopeptide repeat-containing protein At5g66631... 0.02 OrthoFinder output from all 47 species
Gb_32462 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.03 OrthoFinder output from all 47 species
Len_g17138 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02323 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g21649 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g06308 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g25744 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g08526 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g08385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09735 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g09746 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g59517 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15128 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32274 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0102.g019915 No alias not classified & original description: CDS=1-2391 0.03 OrthoFinder output from all 47 species
Sam_g09085 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g11870 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g13511 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g19487 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0015074 DNA integration IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 562 618
IPR002885 Pentatricopeptide_repeat 235 286
IPR002885 Pentatricopeptide_repeat 490 541
IPR002885 Pentatricopeptide_repeat 175 220
IPR002885 Pentatricopeptide_repeat 142 160
No external refs found!