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  5. Len_g08750

Len_g08750


Description : not classified & original description: none


Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g08750

Target Alias Description ECC score Gene Family Method Actions
AT1G58050 No alias RNA helicase family protein 0.02 OrthoFinder output from all 47 species
Azfi_s0022.g015910 No alias not classified & original description: CDS=1-1104 0.03 OrthoFinder output from all 47 species
Dde_g09821 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g12240 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06502 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo437743 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Zm00001e008090_P002 Zm00001e008090 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 495 625
IPR014720 dsRBD_dom 1021 1082
IPR007502 Helicase-assoc_dom 689 762
IPR011709 DEAD-box_helicase_OB_fold 845 926
IPR011545 DEAD/DEAH_box_helicase_dom 241 388
No external refs found!