AT3G52140


Description : tetratricopeptide repeat (TPR)-containing protein


Gene families : OG_01_0004159 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004159_tree ,
OG_02_0003588 (LandPlants) Phylogenetic Tree(s): OG_02_0003588_tree ,
OG_03_0003255 (SeedPlants) Phylogenetic Tree(s): OG_03_0003255_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G52140
Cluster HCCA: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00221290 evm_27.TU.AmTr_v1... Clustered mitochondria protein OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01032046001 No alias Clustered mitochondria protein OS=Arabidopsis thaliana 0.05 Archaeplastida
LOC_Os02g48620.2 No alias Clustered mitochondria protein OS=Arabidopsis thaliana... 0.07 Archaeplastida
MA_10207074g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10427006g0010 No alias Clustered mitochondria protein OS=Arabidopsis thaliana... 0.11 Archaeplastida
MA_31044g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Smo442673 No alias Nutrient uptake.iron uptake.iron storage.PIC-type iron... 0.03 Archaeplastida
Solyc01g086750.4.1 No alias Clustered mitochondria protein OS=Arabidopsis thaliana... 0.17 Archaeplastida
Zm00001e015654_P001 No alias Clustered mitochondria protein OS=Arabidopsis thaliana... 0.16 Archaeplastida
Zm00001e023389_P002 No alias Clustered mitochondria protein OS=Arabidopsis thaliana... 0.12 Archaeplastida
AMTR_s00022p00221290 evm_27.TU.AmTr_v1... Clustered mitochondria protein OS=Arabidopsis thaliana 0.02 LandPlants
GSVIVT01032046001 No alias Clustered mitochondria protein OS=Arabidopsis thaliana 0.04 LandPlants
LOC_Os02g48620.2 No alias Clustered mitochondria protein OS=Arabidopsis thaliana... 0.06 LandPlants
MA_10207074g0010 No alias no hits & (original description: none) 0.04 LandPlants
MA_10427006g0010 No alias Clustered mitochondria protein OS=Arabidopsis thaliana... 0.09 LandPlants
MA_31044g0010 No alias no hits & (original description: none) 0.02 LandPlants
Smo442673 No alias Nutrient uptake.iron uptake.iron storage.PIC-type iron... 0.02 LandPlants
Solyc01g086750.4.1 No alias Clustered mitochondria protein OS=Arabidopsis thaliana... 0.15 LandPlants
Zm00001e015654_P001 No alias Clustered mitochondria protein OS=Arabidopsis thaliana... 0.14 LandPlants
Zm00001e023389_P002 No alias Clustered mitochondria protein OS=Arabidopsis thaliana... 0.11 LandPlants
AMTR_s00022p00221290 evm_27.TU.AmTr_v1... Clustered mitochondria protein OS=Arabidopsis thaliana 0.02 SeedPlants
GSVIVT01032046001 No alias Clustered mitochondria protein OS=Arabidopsis thaliana 0.04 SeedPlants
LOC_Os02g48620.2 No alias Clustered mitochondria protein OS=Arabidopsis thaliana... 0.06 SeedPlants
MA_10427006g0010 No alias Clustered mitochondria protein OS=Arabidopsis thaliana... 0.08 SeedPlants
MA_31044g0010 No alias no hits & (original description: none) 0.02 SeedPlants
Solyc01g086750.4.1 No alias Clustered mitochondria protein OS=Arabidopsis thaliana... 0.14 SeedPlants
Zm00001e015654_P001 No alias Clustered mitochondria protein OS=Arabidopsis thaliana... 0.14 SeedPlants
Zm00001e023389_P002 No alias Clustered mitochondria protein OS=Arabidopsis thaliana... 0.11 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
BP GO:0006094 gluconeogenesis RCA Interproscan
BP GO:0007010 cytoskeleton organization RCA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
BP GO:0010498 proteasomal protein catabolic process RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR025697 CLU_dom 411 669
IPR007967 GSKIP_dom 289 359
IPR028275 CLU_N 128 204
IPR033646 CLU-central 814 993
No external refs found!