AT3G52140

Description : tetratricopeptide repeat (TPR)-containing protein

Gene families : OG_01_0004159 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004159_tree ,
OG_02_0003588 (LandPlants) Phylogenetic Tree(s): OG_02_0003588_tree ,
OG_03_0003255 (SeedPlants) Phylogenetic Tree(s): OG_03_0003255_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G52140
Cluster	HCCA: Cluster_199

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00221290	evm_27.TU.AmTr_v1...	Clustered mitochondria protein OS=Arabidopsis thaliana	0.04	Archaeplastida
GSVIVT01032046001	No alias	Clustered mitochondria protein OS=Arabidopsis thaliana	0.05	Archaeplastida
LOC_Os02g48620.2	No alias	Clustered mitochondria protein OS=Arabidopsis thaliana...	0.07	Archaeplastida
MA_10207074g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_10427006g0010	No alias	Clustered mitochondria protein OS=Arabidopsis thaliana...	0.11	Archaeplastida
MA_31044g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
Smo442673	No alias	Nutrient uptake.iron uptake.iron storage.PIC-type iron...	0.03	Archaeplastida
Solyc01g086750.4.1	No alias	Clustered mitochondria protein OS=Arabidopsis thaliana...	0.17	Archaeplastida
Zm00001e015654_P001	No alias	Clustered mitochondria protein OS=Arabidopsis thaliana...	0.16	Archaeplastida
Zm00001e023389_P002	No alias	Clustered mitochondria protein OS=Arabidopsis thaliana...	0.12	Archaeplastida
AMTR_s00022p00221290	evm_27.TU.AmTr_v1...	Clustered mitochondria protein OS=Arabidopsis thaliana	0.02	LandPlants
GSVIVT01032046001	No alias	Clustered mitochondria protein OS=Arabidopsis thaliana	0.04	LandPlants
LOC_Os02g48620.2	No alias	Clustered mitochondria protein OS=Arabidopsis thaliana...	0.06	LandPlants
MA_10207074g0010	No alias	no hits & (original description: none)	0.04	LandPlants
MA_10427006g0010	No alias	Clustered mitochondria protein OS=Arabidopsis thaliana...	0.09	LandPlants
MA_31044g0010	No alias	no hits & (original description: none)	0.02	LandPlants
Smo442673	No alias	Nutrient uptake.iron uptake.iron storage.PIC-type iron...	0.02	LandPlants
Solyc01g086750.4.1	No alias	Clustered mitochondria protein OS=Arabidopsis thaliana...	0.15	LandPlants
Zm00001e015654_P001	No alias	Clustered mitochondria protein OS=Arabidopsis thaliana...	0.14	LandPlants
Zm00001e023389_P002	No alias	Clustered mitochondria protein OS=Arabidopsis thaliana...	0.11	LandPlants
AMTR_s00022p00221290	evm_27.TU.AmTr_v1...	Clustered mitochondria protein OS=Arabidopsis thaliana	0.02	SeedPlants
GSVIVT01032046001	No alias	Clustered mitochondria protein OS=Arabidopsis thaliana	0.04	SeedPlants
LOC_Os02g48620.2	No alias	Clustered mitochondria protein OS=Arabidopsis thaliana...	0.06	SeedPlants
MA_10427006g0010	No alias	Clustered mitochondria protein OS=Arabidopsis thaliana...	0.08	SeedPlants
MA_31044g0010	No alias	no hits & (original description: none)	0.02	SeedPlants
Solyc01g086750.4.1	No alias	Clustered mitochondria protein OS=Arabidopsis thaliana...	0.14	SeedPlants
Zm00001e015654_P001	No alias	Clustered mitochondria protein OS=Arabidopsis thaliana...	0.14	SeedPlants
Zm00001e023389_P002	No alias	Clustered mitochondria protein OS=Arabidopsis thaliana...	0.11	SeedPlants

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005996	monosaccharide metabolic process	None	Extended
BP	GO:0006006	glucose metabolic process	None	Extended
BP	GO:0006094	gluconeogenesis	RCA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	RCA	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0019318	hexose metabolic process	None	Extended
BP	GO:0019319	hexose biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046364	monosaccharide biosynthetic process	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR025697	CLU_dom	411	669
IPR007967	GSKIP_dom	289	359
IPR028275	CLU_N	128	204
IPR033646	CLU-central	814	993

External Links

No external refs found!

AT3G52140

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation