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  5. Len_g07971

Len_g07971 (ATCUL4, CUL4)


Aliases : ATCUL4, CUL4

Description : scaffold component *(CUL4) of CUL4-DDB1 ubiquitination complexes & original description: none


Gene families : OG0000920 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000920_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g07971

Target Alias Description ECC score Gene Family Method Actions
AT1G69670 CUL3B, ATCUL3B cullin 3B 0.02 OrthoFinder output from all 47 species
Adi_g011667 ATCUL4, CUL4 scaffold component *(CUL4) of CUL4-DDB1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Adi_g058112 ATCUL4, CUL4 scaffold component *(CUL4) of CUL4-DDB1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Aev_g15218 ATCUL4, CUL4 scaffold component *(CUL4) of CUL4-DDB1 ubiquitination... 0.04 OrthoFinder output from all 47 species
Ala_g10369 ATCUL3A, ATCUL3,... scaffold component *(CUL3) of CUL3-BTB E3 ligase... 0.03 OrthoFinder output from all 47 species
Als_g06802 ATCUL4, CUL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g08433 ATCUL3A, ATCUL3,... scaffold component *(CUL3) of CUL3-BTB E3 ligase... 0.03 OrthoFinder output from all 47 species
Aspi01Gene12486.t1 ATCUL4, CUL4,... scaffold component *(CUL4) of CUL4-DDB1 ubiquitination... 0.04 OrthoFinder output from all 47 species
Azfi_s0233.g059433 ATCUL4, CUL4 scaffold component *(CUL4) of CUL4-DDB1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020934.33 CUL3B, ATCUL3B Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Dac_g10487 ATCUL3A, ATCUL3,... scaffold component *(CUL3) of CUL3-BTB E3 ligase... 0.05 OrthoFinder output from all 47 species
Dcu_g13417 ATCUL4, CUL4 scaffold component *(CUL4) of CUL4-DDB1 ubiquitination... 0.03 OrthoFinder output from all 47 species
LOC_Os03g57290.1 ATCUL4, CUL4,... scaffold component CUL4 of CUL4-DDB1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Mp1g07340.1 ATCUL4, CUL4 scaffold component CUL4 of CUL4-DDB1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Ore_g17472 ATCUL4, CUL4 scaffold component *(CUL4) of CUL4-DDB1 ubiquitination... 0.05 OrthoFinder output from all 47 species
Pir_g14749 ATCUL4, CUL4 scaffold component *(CUL4) of CUL4-DDB1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013899 ATCUL3A, ATCUL3,... scaffold component *(CUL3) of CUL3-BTB E3 ligase... 0.02 OrthoFinder output from all 47 species
Sam_g09683 No alias scaffold component *(CUL3) of CUL3-BTB E3 ligase... 0.03 OrthoFinder output from all 47 species
Smo172620 ATCUL4, CUL4 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Smo98006 ATCUL3A, ATCUL3,... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Solyc01g010820.3.1 ATCUL3A, ATCUL3,... scaffold component CUL3 of CUL3-BTB E3 ligase complexes 0.03 OrthoFinder output from all 47 species
Tin_g01191 ATCUL4, CUL4 scaffold component *(CUL4) of CUL4-DDB1 ubiquiTination... 0.03 OrthoFinder output from all 47 species
Zm00001e005919_P001 ATCUL4, CUL4,... scaffold component CUL4 of CUL4-DDB1 ubiquitination... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
MF GO:0031625 ubiquitin protein ligase binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0008569 minus-end-directed microtubule motor activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001373 Cullin_N 116 713
IPR019559 Cullin_neddylation_domain 744 804
No external refs found!