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  5. Len_g07705

Len_g07705


Description : component *(uS13c) of small plastid ribosomal-subunit proteome & original description: none


Gene families : OG0004147 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004147_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g07705
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Aev_g04341 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Ala_g00666 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ceric.05G059300.1 Ceric.05G059300 component *(uS13c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Cre12.g493950 No alias Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
Ehy_g00682 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01008933001 No alias Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
Gb_24491 No alias component mtRPS13|psRPS13 of small ribosomal subunit... 0.04 OrthoFinder output from all 47 species
Len_g05067 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Mp1g18230.1 No alias component mtRPS13|psRPS13 of small ribosomal subunit... 0.03 OrthoFinder output from all 47 species
Nbi_g15772 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Pnu_g13107 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Sam_g47748 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Solyc05g005880.2.1 Solyc05g005880 component mtRPS13|psRPS13 of small ribosomal subunit... 0.02 OrthoFinder output from all 47 species
Spa_g00577 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Zm00001e005396_P004 Zm00001e005396 component mtRPS13|psRPS13 of small ribosomal subunit... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0009512 cytochrome b6f complex IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 40 148
No external refs found!