Aliases : PACid_15414251
Description : 35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein Encodes a chloroplast RNA editing factor. ORGANELLE TRANSCRIPT PROCESSING 86 (OTP86) CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885) BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21300.1) Has 48148 Blast hits to 13528 proteins in 241 species: Archae - 0 Bacteria - 4 Metazoa - 44 Fungi - 62 Plants - 47536 Viruses - 0 Other Eukaryotes - 502 (source: NCBI BLink). & (q76c99|rf1_orysa : 124.0
Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR network (cutoff 100): Smo105356 | |
Cluster | HCCA cluster: Cluster_149 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G18485 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Gene family | |
GSVIVT01009407001 | No alias | 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... | 0.02 | Gene family | |
GSVIVT01011333001 | No alias | 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... | 0.03 | Gene family | |
GSVIVT01038381001 | No alias | 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... | 0.01 | Gene family | |
LOC_Os01g10800 | Os01g0205200 | No description available | 0.02 | Gene family | |
LOC_Os02g53050 | Os02g0769900 | 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... | 0.03 | Gene family | |
LOC_Os04g02850 | Os04g0118700 | 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... | 0.03 | Gene family | |
MA_10433543g0010 | No alias | No description available | 0.03 | Gene family | |
MA_117650g0010 | No alias | 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... | 0.01 | Gene family | |
MA_501007g0010 | No alias | No description available | 0.01 | Gene family | |
MA_77675g0010 | No alias | No description available | 0.01 | Gene family | |
MA_80970g0010 | No alias | 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... | 0.01 | Gene family | |
MA_8868720g0010 | No alias | 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... | 0.01 | Gene family | |
MA_953793g0020 | No alias | No description available | 0.03 | Gene family | |
Smo106861 | PACid_15420913 | No description available | 0.01 | Gene family | |
Solyc03g025700.1.1 | Solyc03g025700.1 | 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... | 0.02 | Gene family | |
Solyc11g066920.1.1 | Solyc11g066920.1 | 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... | 0.02 | Gene family | |
Solyc12g006575.1.1 | Solyc12g006575.1 | 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... | 0.02 | Gene family | |
Zm00001d031535 | GRMZM2G076257 | No description available | 0.03 | Gene family | |
Zm00001d037036 | GRMZM2G129783 | 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... | 0.02 | Gene family |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No Predicted GO terms available for this sequence |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 651 | 671 |
No external refs found! |