Smo104980 (PACid_15415938)


Aliases : PACid_15415938

Description : 27.3.3 RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family Encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family (RAP2.4). The protein contains one AP2 domain. Role in mediating light and ethylene signaling. related to AP2 4 (RAP2.4) CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471) BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G22190.1) Has 5853 Blast hits to 5721 proteins in 258 species: Archae - 0 Bacteria - 10 Metazoa - 0 Fungi - 0 Plants - 5806 Viruses - 11 Other Eukaryotes - 26 (source: NCBI BLink). & (loc_os04g44670.1 : 87.4


Gene families : OG_01_0000000 (Gene family) Phylogenetic Tree(s): OG0000000_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo104980
Cluster HCCA cluster: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
AT1G21910 DREB26 Integrase-type DNA-binding superfamily protein 0.04 Gene family
AT1G28370 ATERF11, ERF11 ERF domain protein 11 0.02 Gene family
AT1G77640 No alias Integrase-type DNA-binding superfamily protein 0.02 Gene family
AT4G16750 No alias Integrase-type DNA-binding superfamily protein 0.03 Gene family
AT5G07580 No alias Integrase-type DNA-binding superfamily protein 0.03 Gene family
AT5G51190 No alias Integrase-type DNA-binding superfamily protein 0.02 Gene family
AT5G61590 No alias Integrase-type DNA-binding superfamily protein 0.03 Gene family
GSVIVT01002195001 No alias 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.02 Gene family
GSVIVT01006277001 No alias 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.02 Gene family
GSVIVT01015540001 No alias No description available 0.03 Gene family
GSVIVT01018272001 No alias 17.5.2 hormone metabolism.ethylene.signal transduction... 0.02 Gene family
GSVIVT01036228001 No alias No description available 0.02 Gene family
LOC_Os02g32040 Os02g0520000 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.03 Gene family
LOC_Os02g32140 Os02g0521100 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.02 Gene family
LOC_Os03g08470 Os03g0183000 No description available 0.02 Gene family
LOC_Os04g46400 Os04g0549700 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.02 Gene family
LOC_Os08g31580 Os08g0408500 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.04 Gene family
LOC_Os09g39850 Os09g0572000 No description available 0.03 Gene family
MA_10031781g0010 No alias No description available 0.03 Gene family
MA_10430231g0010 No alias 17.5.2 hormone metabolism.ethylene.signal transduction... 0.02 Gene family
MA_10430769g0010 No alias 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.04 Gene family
MA_115502g0010 No alias 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.03 Gene family
MA_37766g0010 No alias No description available 0.03 Gene family
MA_502153g0010 No alias No description available 0.03 Gene family
MA_896002g0010 No alias 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.02 Gene family
Smo409196 PACid_15422590 No description available 0.02 Gene family
Solyc02g090800.1.1 Solyc02g090800.1 No description available 0.02 Gene family
Solyc03g116610.3.1 Solyc03g116610.3 No description available 0.02 Gene family
Solyc03g117130.3.1 Solyc03g117130.3 No description available 0.03 Gene family
Solyc04g071770.3.1 Solyc04g071770.3 No description available 0.03 Gene family
Solyc06g066540.1.1 Solyc06g066540.1 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.02 Gene family
Solyc11g042560.1.1 Solyc11g042560.1 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.03 Gene family
Solyc12g008350.2.1 Solyc12g008350.2 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.02 Gene family
Zm00001d002011 GRMZM2G067463 No description available 0.03 Gene family
Zm00001d002761 GRMZM5G805505 No description available 0.02 Gene family
Zm00001d020595 GRMZM2G052667 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.02 Gene family
Zm00001d025409 GRMZM2G175525 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.02 Gene family
Zm00001d026486 GRMZM2G104260 17.5.2 hormone metabolism.ethylene.signal transduction... 0.02 Gene family
Zm00001d029679 GRMZM2G477287 No description available 0.03 Gene family
Zm00001d030862 GRMZM2G039112 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.03 Gene family
Zm00001d031498 GRMZM2G016079 No description available 0.02 Gene family
Zm00001d031861 GRMZM2G028386 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.02 Gene family
Zm00001d038320 GRMZM2G100727 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.02 Gene family
Zm00001d045204 GRMZM2G301860 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.02 Gene family
Zm00001d048297 GRMZM2G399098 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.04 Gene family

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 131 180
No external refs found!