AT3G50420

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG_01_0010988 (Archaeplastida) Phylogenetic Tree(s): OG_01_0010988_tree ,
OG_02_0010944 (LandPlants) Phylogenetic Tree(s): OG_02_0010944_tree ,
OG_03_0010904 (SeedPlants) Phylogenetic Tree(s): OG_03_0010904_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G50420
Cluster	HCCA: Cluster_20

Target	Alias	Description	ECC score	Gene Family Method
MA_98067g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Solyc02g090240.4.1	No alias	Pentatricopeptide repeat-containing protein At3g50420...	0.04	Archaeplastida
LOC_Os04g57670.1	No alias	Pentatricopeptide repeat-containing protein At3g50420...	0.02	LandPlants
MA_98067g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	LandPlants
Solyc02g090240.4.1	No alias	Pentatricopeptide repeat-containing protein At3g50420...	0.03	LandPlants
LOC_Os04g57670.1	No alias	Pentatricopeptide repeat-containing protein At3g50420...	0.02	SeedPlants
MA_98067g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.02	SeedPlants
Solyc02g090240.4.1	No alias	Pentatricopeptide repeat-containing protein At3g50420...	0.03	SeedPlants

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	264	312
IPR002885	Pentatricopeptide_repeat	567	615
IPR002885	Pentatricopeptide_repeat	641	663
IPR002885	Pentatricopeptide_repeat	26	53
IPR002885	Pentatricopeptide_repeat	136	162
IPR002885	Pentatricopeptide_repeat	339	361
IPR002885	Pentatricopeptide_repeat	469	496
IPR002885	Pentatricopeptide_repeat	367	394
IPR002885	Pentatricopeptide_repeat	541	562
IPR002885	Pentatricopeptide_repeat	441	468

External Links

No external refs found!