Smo104940 (PACid_15415839)


Aliases : PACid_15415839

Description : 27.3.27 RNA.regulation of transcription.NAC domain transcription factor family Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). <i>Cuc</i> mutant was first recognized at the heart stage, where embryos lacking two distinct bulges of cotyledonary primordia were observed. CUP-SHAPED COTYLEDON1 (CUC1) CONTAINS InterPro DOMAIN/s: No apical meristem (NAM


Gene families : OG_01_0000027 (Gene family) Phylogenetic Tree(s): OG0000027_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo104940
Cluster HCCA cluster: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01001264001 No alias 33.99 development.unspecified Encodes a NAC-domain... 0.02 Gene family
GSVIVT01008291001 No alias 33.99 development.unspecified NAC domain containing... 0.02 Gene family
GSVIVT01018623001 No alias 33.99 development.unspecified Encodes a NAC-domain... 0.03 Gene family
GSVIVT01035214001 No alias 27.3.27 RNA.regulation of transcription.NAC domain... 0.02 Gene family
LOC_Os03g02800 Os03g0119966 27.3.27 RNA.regulation of transcription.NAC domain... 0.02 Gene family
LOC_Os12g03050 Os12g0123800 33.99 development.unspecified Arabidopsis NAC domain... 0.02 Gene family
MA_10430340g0010 No alias 33.99 development.unspecified NAC domain containing... 0.01 Gene family
Solyc06g069710.3.1 Solyc06g069710.3 33.99 development.unspecified NAC domain containing... 0.01 Gene family
Solyc06g074170.3.1 Solyc06g074170.3 33.99 development.unspecified NTM1-like 8 (NTL8) 0.02 Gene family
Zm00001d017396 GRMZM2G315140 33.99 development.unspecified Encodes a NAC-domain... 0.01 Gene family
Zm00001d041472 GRMZM2G114850 27.3.27 RNA.regulation of transcription.NAC domain... 0.03 Gene family

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003441 NAC-dom 24 162
No external refs found!