Smo104811 (PACid_15415018)

Aliases : PACid_15415018

Description : 27.1 RNA.processing Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.

Gene families : OG_01_0002236 (Gene family) Phylogenetic Tree(s): OG0002236_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): Smo104811
Cluster	HCCA cluster: Cluster_172

Target	Alias	Description	ECC score	Gene Family Method	Actions
Zm00001d032198	GRMZM2G082174	27.1 RNA.processing Encodes one of the two...	0.02	Gene family
Zm00001d044195	GRMZM2G058039	27.1 RNA.processing Encodes one of the two...	0.01	Gene family

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	21	72

External Links

No external refs found!

Smo104811 (PACid_15415018)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation