AT3G49500 (SDE1, RDR6, SGS2)

Aliases : SDE1, RDR6, SGS2

Description : RNA-dependent RNA polymerase 6

Gene families : OG_01_0000823 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000823_tree ,
OG_02_0003329 (LandPlants) Phylogenetic Tree(s): OG_02_0003329_tree ,
OG_03_0002749 (SeedPlants) Phylogenetic Tree(s): OG_03_0002749_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: AT3G49500
Cluster HCCA: Cluster_215

Target Alias Description ECC score Gene Family Method Actions
Solyc03g114140.3.1 No alias ssRNA polymerase (RDR2) 0.04 Archaeplastida
Zm00001e007872_P002 No alias ssRNA polymerase (RDR2) 0.02 Archaeplastida
GSVIVT01035851001 No alias RNA biosynthesis.siRNA biogenesis.RDR6 ssRNA polymerase 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0009616 RNAi-mediated antiviral immune response IMP Interproscan
BP GO:0010267 production of ta-siRNAs involved in RNA interference IMP Interproscan
BP GO:0016246 RNA interference IMP Interproscan
BP GO:0016441 posttranscriptional gene silencing TAS Interproscan
BP GO:0030422 production of siRNA involved in RNA interference TAS Interproscan
BP GO:0031047 gene silencing by RNA IMP Interproscan
BP GO:0048366 leaf development IGI Interproscan
BP GO:0048440 carpel development IGI Interproscan
BP GO:0048467 gynoecium development IMP Interproscan
BP GO:0048544 recognition of pollen IMP Interproscan
BP GO:0051607 defense response to virus IMP Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 416 999
No external refs found!