AT3G49430 (At-SR34a, SR34a, SRp34a)

Aliases : At-SR34a, SR34a, SRp34a

Description : SER/ARG-rich protein 34A

Gene families : OG_01_0001375 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001375_tree ,
OG_02_0001509 (LandPlants) Phylogenetic Tree(s): OG_02_0001509_tree ,
OG_03_0001416 (SeedPlants) Phylogenetic Tree(s): OG_03_0001416_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G49430
Cluster	HCCA: Cluster_262

Target	Alias	Description	ECC score	Gene Family Method
Cre01.g026450	No alias	RNA processing.RNA splicing.spliceosome-associated...	0.02	Archaeplastida
MA_11621g0010	No alias	SR30/34 RNA splicing factor	0.03	Archaeplastida
MA_259575g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MpVg00980.1	No alias	No annotation	0.04	Archaeplastida
Pp3c2_2470V3.1	No alias	SER/ARG-rich protein 34A	0.04	Archaeplastida
MA_11621g0010	No alias	SR30/34 RNA splicing factor	0.03	LandPlants
Pp3c1_35700V3.1	No alias	SER/ARG-rich protein 34A	0.02	LandPlants
Pp3c2_2470V3.1	No alias	SER/ARG-rich protein 34A	0.04	LandPlants
GSVIVT01031132001	No alias	RNA processing.RNA splicing.spliceosome-associated...	0.02	SeedPlants
Gb_20155	No alias	SR30/34 RNA splicing factor	0.02	SeedPlants
MA_11621g0010	No alias	SR30/34 RNA splicing factor	0.03	SeedPlants
MA_259575g0010	No alias	no hits & (original description: none)	0.03	SeedPlants
Solyc03g082380.4.1	No alias	SR30/34 RNA splicing factor	0.02	SeedPlants
Solyc09g075090.1.1	No alias	SR30/34 RNA splicing factor	0.02	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	NAS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	124	186
IPR000504	RRM_dom	9	76

External Links

No external refs found!

AT3G49430 (At-SR34a, SR34a, SRp34a)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation