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  5. Len_g05139

Len_g05139


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase & original description: none


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g05139

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00129p00065710 ATL2, TL2,... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AT1G22500 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G72200 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT2G35000 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G14320 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.02 OrthoFinder output from all 47 species
AT3G16720 ATL2, TL2 TOXICOS EN LEVADURA 2 0.03 OrthoFinder output from all 47 species
AT5G42200 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G57750 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g057160 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Als_g42113 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g70816 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.09G083500.1 Ceric.09G083500 not classified & original description: pacid=50586830... 0.03 OrthoFinder output from all 47 species
Ehy_g00468 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ehy_g26675 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
GSVIVT01008756001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Gb_41385 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os02g46600.1 LOC_Os02g46600 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os05g29710.1 LOC_Os05g29710 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os08g34550.1 LOC_Os08g34550 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os11g05300.1 LOC_Os11g05300 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Lfl_g29081 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
MA_105610g0010 RHA3A no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_1115518g0010 ATL2, TL2 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_932090g0010 ATL6 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_9515738g0010 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_9764263g0010 No alias RING-H2 finger protein ATL67 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_98187g0010 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Mp2g11860.1 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Msp_g19472 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Nbi_g05230 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ore_g32953 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ore_g41609 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pir_g06476 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Pir_g59573 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ppi_g03072 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ppi_g42660 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g03342 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25087 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sam_g34706 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc08g076830.1.1 Solyc08g076830 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Solyc09g066300.3.1 Solyc09g066300 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Solyc12g087840.1.1 Solyc12g087840 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Spa_g10665 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Tin_g38481 No alias RING-H2-class ATL-subclass E3 ubiquiTin ligase &... 0.04 OrthoFinder output from all 47 species
Zm00001e015259_P001 Zm00001e015259 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e023238_P001 Zm00001e023238 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e024866_P001 ATL43, Zm00001e024866 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e029032_P001 Zm00001e029032 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 98 141
No external refs found!