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  5. Len_g05104

Len_g05104


Description : component *(uS10c) of small plastid ribosomal-subunit proteome & original description: none


Gene families : OG0005087 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005087_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g05104
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AT3G13120 No alias Ribosomal protein S10p/S20e family protein 0.12 OrthoFinder output from all 47 species
Adi_g110634 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Aev_g19264 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ala_g00684 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Als_g12392 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Als_g12393 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Aob_g01396 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Aop_g01016 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Azfi_s0015.g013794 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Cba_g65626 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ceric.34G039900.1 Ceric.34G039900 component *(uS10c) of small plastid ribosomal-subunit... 0.13 OrthoFinder output from all 47 species
Cre03.g195650 No alias Protein biosynthesis.organelle translation... 0.09 OrthoFinder output from all 47 species
Dac_g37977 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Dcu_g02308 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Dcu_g40455 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Dde_g03129 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Ehy_g00382 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
GSVIVT01014640001 No alias Protein biosynthesis.organelle translation... 0.06 OrthoFinder output from all 47 species
Gb_11573 No alias component psRPS10 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
LOC_Os03g10060.1 LOC_Os03g10060 component psRPS10 of small ribosomal subunit proteome 0.08 OrthoFinder output from all 47 species
Lfl_g00728 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
MA_10432148g0010 No alias component psRPS10 of small ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
Mp7g14220.1 No alias component psRPS10 of small ribosomal subunit proteome 0.13 OrthoFinder output from all 47 species
Msp_g06896 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Nbi_g28161 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.11 OrthoFinder output from all 47 species
Pnu_g14839 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Pp3c20_8830V3.1 Pp3c20_8830 Ribosomal protein S10p/S20e family protein 0.02 OrthoFinder output from all 47 species
Pp3c24_19230V3.1 Pp3c24_19230 Ribosomal protein S10p/S20e family protein 0.02 OrthoFinder output from all 47 species
Ppi_g10665 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009907 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Sam_g12677 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Smo118761 No alias Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
Solyc10g006030.3.1 Solyc10g006030 component psRPS10 of small ribosomal subunit proteome 0.11 OrthoFinder output from all 47 species
Spa_g16248 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Spa_g35752 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g54664 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g09762 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Zm00001e000789_P001 Zm00001e000789 component psRPS10 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Zm00001e038796_P002 Zm00001e038796 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004602 glutathione peroxidase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR027486 Ribosomal_S10_dom 90 184
No external refs found!